Found a solution.
Basically it is to add
pmg_tk/startup/newmenu.py
file with the following content:
from Tkinter import *
from pymol import cmd
def __init__(self):
self.menuBar.addmenu('NewMenu', 'Sample Menu')
self.menuBar.addmenuitem('NewMenu', 'command',
'White background',
label='White Background',
command = lambda : cmd.set("bg_rgb","[1,1,1]"))
self.menuBar.addmenuitem('NewMenu', 'command',
'Black background',
label='Black Background',
command = lambda : cmd.set("bg_rgb","[0,0,0]"))
This adds the menu.
I got what I wanted with:
- .pymolrc:
# custom scripts:
import imp
imp.load_source('bk_pymols', os.path.expanduser('~/.pymolrc.py'))
- .pymolrc.py
from pymol import cmd
def bk_notW ():
"Makes notW selection."
cmd.select("notW", "not (resn W)")
def bk_hides_W ():
"Hides W molecules."
cmd.hide("all")
cmd.show("spheres", "not (resn W)")
cmd.set_key('ALT-N', bk_notW)
cmd.set_key('ALT-W', bk_hides_W)
- and finally -- pmg_tk/startup/BK.py:
from Tkinter import *
from pymol import cmd
# custom scripts:
import imp, os
imp.load_source('bk_pymols', os.path.expanduser('~/.pymolrc.py'))
from bk_pymols import bk_notW, bk_hides_W
def __init__(self):
self.menuBar.addmenu('BK', 'My menus!')
self.menuBar.addmenuitem('BK', 'command',
'Makes notW [Alt-n]',
label='Makes notW [Alt-n]',
command = bk_notW)
self.menuBar.addmenuitem('BK', 'command',
'Hides W mols [Alt-w]',
label='Hides W mols [Alt-w]',
command = bk_hides_W)
Works like a charm: I have custom menus and I can bind any of its entries
to a key.
But I want bk_hides_W to be a toggler. So I need a way to set a state of my
defun.
If I do
def bk_toggles_W ():
"Hides W molecules."
if cmd.get("bk_toggles_W"):
cmd.hide("all")
cmd.show("spheres", "not (resn W)")
cmd.set("bk_toggles_W", 0)
else:
cmd.show("spheres", "resn W")
cmd.set("bk_toggles_W", 1)
pymol is upset -- I think it is because it doesn't know bk_toggles_Wsetting:
Error: 1
QuietException Exception in Tk callback
Function: <function bk_toggles_W at 0x7ff02d90cb90> (type: <type
'function'>)
Args: ()
Traceback (innermost last):
File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line
1747, in __call__
return apply(self.func, args)
File "/home/boris/.pymolrc.py", line 67, in bk_toggles_W
if cmd.get("bk_toggles_W"):
File "/home/boris/.local/lib/python2.7/site-packages/pymol/setting.py",
line 1300, in get
raise QuietException
QuietException: <pymol.parsing.QuietException instance at 0x7ff018698518>
How can I add the setting to pymol?
--
Boris.
On Tue, Oct 23, 2012 at 5:17 PM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Boris,
>
> David Hall's suggestions are perfect.
>
> Let me offer one more. If you can put up with programming a little
> Python, check out pymol/modules/pymol/menu.py and
> pymol/modules/pymol/preset.py. In menu.py you could add a "No W" menu
> option (or similar) to the A > Preset >
>
> Cheers,
>
> -- Jason
>
> On Tue, Oct 23, 2012 at 6:02 AM, Boris Kheyfets <kheyfbo...@gmail.com>
> wrote:
> > Hello PyMOL users,
> >
> > Menus
> > =====
> >
> > Is there a way I can add custom menu in PyMOL?
> >
> > Ideally I'd like to be able to call both
> >
> > * pml scripts, as well as
> > * full python pymol scrpts
> >
> > Shortcuts
> > =========
> >
> > Similarly -- is there a way I can bind exectution of given
> >
> > * pml script, or
> > * full python pymol script
> >
> > to a given key?
> >
> > The problem
> > ===========
> >
> > The basic problem
> > -----------------
> >
> > The basic problem is to automate tasks one repeats frequenlty. For
> example I
> > had to type::
> >
> > select notW, not (resn W)
> > hide all
> > show spheres, notW
> >
> > frequently.
> >
> >
> > The problem which leads to the need of menu
> > -------------------------------------------
> >
> > So I make a pml or full-python pymol script and load it.
> >
> > But then I have to remember the name of the script. Which is terrible --
> > because I have custom scripts in each and every program that I use.
> >
> >
> > The problem which leads to the need of custom shortcuts
> > -------------------------------------------------------
> >
> > Having custom menu us great as a reminder of what scripts have You
> written.
> > But it's terrible to click through the menus. One is much better with
> > shorcuts (hotkeys).
> >
> >
> >
> >
> >
> ------------------------------------------------------------------------------
> > Everyone hates slow websites. So do we.
> > Make your web apps faster with AppDynamics
> > Download AppDynamics Lite for free today:
> > http://p.sf.net/sfu/appdyn_sfd2d_oct
> > _______________________________________________
> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrödinger, Inc.
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
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