Hi All
I am very new to using Pymol. I am wondering if anyone can point me towards the
right direction with the following:
1) I have a list of peptides and would like to know what their location is on
their respective proteins which already have structures in PDB (surface
exposed, buried, helix, loop or beta sheet?)
I guess I could do it manually but the peptide list could go into
hundreds and would be nice to see if there a command line or a script I could
use.
2) Can i ask Pymol to show the peptide's location on the 3d structure of the
protein? perhaps in a different colour to highlight location?
Manually I would select on the sequence and show as whatever I want but
is there a command to automate a huge list?
Is it possible to do these tasks with Pymol or is there any other software I
could be using?
Thanks very much for your help,
Cheers
Sri
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