Hena, > I created two objects as follows: > > pseudoatom A1, pos=[10.0, 10.0, 100.0] > pseudoatom A2, pos=[10.0, 10.0, -200.0] > > I want to create a bond between these two atoms. Could you please help me? I > need to display a 2 fold axis passing through these points.
You can create a distance measure between them as shown here, http://www.pymolwiki.org/index.php/Pseudoatom. Or you can do this: pseudoatom foo1, pos=[0,0,0], name=CA pseudoatom foo2, pos=[1,1,1], name=CB create foo, foo1 or foo2 bond foo////CA, foo////CB which creates a single object from the two pseudoatoms and bonds the two pseudoatoms. Cheers, -- Jason -- Jason Vertrees, PhD Director of Core Modeling Product Management Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
