Thanks but it looks like I am ok now ( aside from orignally posting this on the wrong list LOL).
My python build still hangs and has problems with the list area on right but the configure/make build process works fine and I could find the problem. Generally error checking is the last thing ayone wants to do and the positions sensitive fields are a big problem to find from a segfault. I think this is the 5..0.2 open source version. In any case, I wanted to allow for input of some custom file formats and maybe integrate with some of my old code and it now looks like I can do that. Would be happy to contribute at some point if I get something that works LOL. Thanks. ---------------------------------------- > Date: Thu, 3 Jan 2013 12:32:01 +0100 > From: thomas.hol...@schrodinger.com > To: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] which code actually executes to load axplor file? > Debugstatements not executing. > > Hi Mike, > > I guess you are on Linux with Open-Source PyMOL, right? Can you send me > the xplor file that causes PyMOL to segfault? From your backtrace it > looks like the problem is related to crystal symmetry information. > > If you want to load some format which is not yet supported by PyMOL, the > easiest solution is to convert it to some already supported format on > the fly and feed that to PyMOL, if possible. > > Cheers, > Thomas > > Mike Marchywka wrote, On 01/02/13 17:01: > > I'm trying to load a self-generated xplor file and pymol keeps segfaulting. > > I wanted to debug the > > problem but can't get my debug statements to execute. The only thing that > > greps for "xplor" > > is a few pymol modules and plugin called edmplugin. If I rebuild the plugin > > and relink pymol > > nothing seems to change. Is this the right code? I also wanted to add a > > loader for other > > formats of density or vector fields and maybe do some rendering (I have an > > old viewer I wrote > > with glut and thought I may be able to salvage parts of that for use here). > > > > Thanks. > > -- > Thomas Holder > PyMOL Developer > Schrödinger Contractor > > ------------------------------------------------------------------------------ > Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, > MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current > with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft > MVPs and experts. ON SALE this month only -- learn more at: > http://p.sf.net/sfu/learnmore_122712 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnmore_122712 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
