Dear PyMOL Users,
I've been using fetch and fetchlocal (from the wiki) for working with multiple
datasets of structures, but have a nagging issue that I have not found an
efficient way to solve. I typically download the first biological unit, which
works for X-ray structures. The trouble is (for good reason), NMR structures
don't have a .pdb1 file. Does anyone have a script to do, or have a good idea
about how to implement, the following? (It's really my lack of familiarity with
catching the value from functions like cmd.get_names (rather than it just being
printed) in python that's my barrier...)
Attempt to fetch 2yrq.pdb1
If fetch fails, try fetching 2yrq.pdb
If successful and we have >1 state, save the first state
Thanks!
Michael T. Zimmermann
Ph. D. in Bioinformatics | Health Sciences Research | Division of Biomedical
Statistics and Informatics
Mayo Clinic | 200 First Street SW | Rochester, MN 55905 |
mayoclinic.org<http://www.mayoclinic.org>
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