Hi,

> I don't think we can programmatically move the OpenGL window once it's
> started up, however.

What about cmd.window()?
For example,
 cmd.window("position", 500, 300)
It worked fine on Ubuntu.

"help window" says

> DESCRIPTION
>     "window" controls the visibility of PyMOL's output window
>  
> USAGE
>     window [ action [, x [, y [, width [, height ]]]]]
>  
> NOTES
>     This command is not fully implemented in MacPyMOL.
>  
> PYMOL API
>  
>     cmd.window(string action, int x, int y, int width, int height) 

"action" is one of the following, judging from the error message.
box, fit, hide, position, size, defocus, focus, maximize, show

Best regards,

Takanori Nakane

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