Hi Martin, only distance measures can draw dashed lines in PyMOL, so try this:
unbond elem W, elem C show sticks show sphere, elem W distance transbonds, elem W, elem C hide label set dash_round_ends, off set dash_radius, 0.2 set dash_length, 0.4 set dash_gap, 0.15 ray The dashes will display as nice cylinders when ray traced and also with the new shader rendering in PyMOL 1.5 (set use_shaders). Cheers, Thomas Martin Hediger wrote, On 02/26/13 09:57: > Dear PyMOL Users > > If you load these coordinates in PyMOL > > HETATM 1 W LIG 1 -1.357 -0.079 0.052 1.00 0.00 W > HETATM 2 C LIG 1 -0.713 -1.686 1.008 1.00 0.00 C > HETATM 3 C LIG 1 -0.323 -1.855 -0.270 1.00 0.00 C > HETATM 4 H LIG 1 -0.664 -2.180 1.970 1.00 0.00 H > HETATM 5 H LIG 1 -0.441 -2.597 -1.043 1.00 0.00 H > > you'll see that a bond between W and C is drawn. However, this is > supposed to be a transition state, so a dashed bond would be more > appropriate. Can this somehow be drawn? > > Thanks, > Martin -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
