Yeah.
That is a cool feature, and is kind of the "future" of publishing. :-)
Or at least, a very powerful tool for teaching.
*But it is sad that it only have cartoon export.*
I wish that it could include other representations.
For now I use Jmol, which can export the *whole representation in the window
*.
I can import small molecules through. Files->Get MOL-> And then CAS number
or smiles.
For proteins I scoop into rcsb.org, and find the protein in the Jmol online
viewer. (Just changing to white back ground).
Right click in Jmol window->Export file->Export IDTF 3D model.
That saves a .idtf file, and a .tex file ready for LaTeX.
Rename the .idtf file, so it only ends on .idtf and not: filename.xyz.idtf
Simpy converting the .idtf to .u3d as instructed in,
http://www.pymolwiki.org/index.php/3d_pdf)
and you are ready to go from the given .tex file. (Removing the last looong
comment section.)
With a little practice, it only takes 3 min, to have 3d implementation of
your molecule
in teaching material / beamer presentation.
I wish that could be implemented in PyMOL, and I have been looking for a
wish list,
but I don't know where that exists?
Best
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil: +45 60210234
2013/3/12 Mooers, Blaine H.M. (HSC) <blaine-moo...@ouhsc.edu>
> I saw Jason Vertrees update of http://www.pymolwiki.org/index.php/3d_pdf.
> It has the address to the source code for u3d-1.4.3. I could not compile
> earlier
> versions of this program on a Mac running Snow Leopard, but I had
> success with this version. I followed Jason's directions for compiling on
> Linux through chmod g+wx. I had installed cmake earlier.
>
> The program compiles fine on Ubuntu 12.04 too.
>
> I used pdflatex from fink with beamer and the movies15 package.
>
>
> Blaine Mooers
> Assistant Professor
> Director Macromolecular Crystallography Lab
> Member Stephenson Cancer Center
> Department of Biochemistry and Molecular Biology
> University of Oklahoma Health Sciences Center
> S.L. Young Biomedical Research Center Rm. 466
>
> Letter address:
> P.O. Box 26901, BRC 466
> Oklahoma City, OK 73190
>
> Shipping address:
> 975 NE 10th Street, BRC 466
> Oklahoma City, OK 73104-5419
>
> office: (405) 271-8300 lab: (405) 271-8313 fax: (405) 271-3910
>
> e-mail: blaine-moo...@ouhsc.edu
>
> Faculty webpage:
> http://www.oumedicine.com/department-of-biochemistry-and-molecular-biology/faculty/blaine-mooers-ph-d-
> X-ray lab webpage:
> http://www.oumedicine.com/department-of-biochemistry-and-molecular-biology/department-facilities/macromolecular-crystallography-laboratory
> SAXS Links webpage:
> http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-x-ray-scattering-links.html?sfvrsn=0
>
>
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