Dear PyMOl users!
I've forced with the problem during installing of the DSSP/STRIDE plugin.
In particular I've download pymol's plugins (and installed it via the
plugin's meny) as well as DSSP binaries.
then I've add DSSP_bin to the bash.rc
so in the terminal I can launch it
own@starlight ~/Documents/pymol $ dssp
DSSP 2.0.4 options:
-h [ --help ] Display help message
-i [ --input ] arg Input file
-o [ --output ] arg Output file, use 'stdout' to output to screen
-v [ --verbose ] Verbose output
--version Print version
-d [ --debug ] arg Debug level (for even more verbose output)
Examples:
To calculate the secondary structure for the file 1crn.pdb and
write the result to a file called 1crn.dssp, you type:
dssp.exe -i 1crn.pdb -o 1crn.dssp
but I cant use it in the pymol window.
When I've tried to launch pymol script manually
e.g by run pymol_dssp_stride.py
I've obtained alot of errors that dssp and stride have not been launched.
If I tried to start pre-installed script by
run dssp
I've obtained
PyMOL>run dssp
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 338, in parse
parsing.run_file(path,self.pymol_names,self.pymol_names)
File "/usr/lib/python2.7/dist-packages/pymol/parsing.py", line 455,
in run_file
execfile(file,global_ns,local_ns)
File "dssp", line 1
SyntaxError: Non-ASCII character '\xb7' in file dssp on line 2, but no
encoding declared; see http://www.python.org/peps/pep-0263.html for
details
How Should I fix it?
Thanks for help
James
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