Hi All,

I'm trying to change a stretch of a polypeptide chain (residues 3-9) into a 
helix. I use the alter command:


alter 3-9/, ss='H'


But when I try to see the updated structure in cartoon, the structure doesn't 
appear like a helix. It looks like a distorted helix. How do I correct it?


Thanks,
Ritu

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