Hi Yury, if you have the electron cloud as map data, you can load it into PyMOL and use any map visualization (volume, isosurface, isomesh). Once the map is loaded into PyMOL, use the "A" (Action) button next to the object name in the object menu panel on the right.
Supported map formats include: xplor, ccp4, phi, dx. Cheers, Thomas Yury Polikanov wrote, On 06/13/13 20:50: > Dear PyMOL users, > > I need to visualize sp3-hybridized electron cloud with lone pair of electrons > to > make figure explaining the chemical mechanism of the reaction. Does anyone > know > if it is possible to accomplish with PyMOL??? > Any comments or suggestions would be valuable! > Thanks a lot in advance! > > Best regards, > Yury -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
