Hi PyMOL users,
thank you for your help. I tried to apply Carsten's suggestions using
the LINE_STRIP approach. This is what I tested:
from pymol.cgo import * # get constants
from pymol import cmd
obj = [
LINEWIDTH, 50,
BEGIN, LINE_STRIP,
COLOR, 255, 0, 0,
VERTEX, 11.335700035095215, 7.798659801483154, 7.798659801483154,
VERTEX, 11.335700035095215, 5.352089881896973, 5.352089881896973,
VERTEX, 14.965800285339355, 5.352089881896973, 5.352089881896973,
VERTEX, 14.965800285339355, 7.798659801483154, 7.798659801483154,
VERTEX, 11.335700035095215, 7.798659801483154, 7.798659801483154,
END
]
cmd.load_cgo(obj,'cgo01')
where four atoms make up a square. This snippet creates - when called by
"run <path-to-script>" - four lines between these coordinates I got by
using "print cmd.get_model('<selection-name>', 1).get_coord_list()". How
can I have the the area between those four points filled with a colour
of my choice and have it be partly transparent? The next step would be
to create polyhedra with corresponding surfaces with atoms spanning a
three dimensional object.
Thanks in advance
Timo
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