Dear all,

I have aligned two structures (one the initial structure and another one is the 
final structure after MD simulation) in pymol, now I want to measure the 
C-alpha- C-alpha distances of each residue between the initial and the final 
structure of the MD simulation. Is it possible to do it by pymol, if yes then 
how to do it. Please help me in this regard I am very new to this field. 

Thank u in advance,

Ananya
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