Dear all,
After simulation of my protein I have aligned the initial and the final
structure and I could see movement in one domain, now to measure the angle
between the domain I used the following lines,
Select d1, Structure1 and resi 1-160
Select d2, Structure2 and resi 1-160
angle_between_domains d1, d2
and then I am geting following error,
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 464, in parse
exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
File "<string>", line 1
angle_between_domains d1, d2
^
SyntaxError: invalid syntax
Can any one tell me where am I getting wrong and also is there any other way to
measure the angle between the domain moved.
Thanks in advance
Ananya
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