Hi,
I could not find the the algorithm by which pymol calculates the solvent
ASA.
What I understood is that pymol adds the vdw radii of atom and probe, makes
the sphere around the center of selected atoms, puts some dots and
according to the density of dots it calculates the SASA.
or it simply uses the Richard & Lee algorithm of rolling water.
Please clarify my doubts.
--
Best regards
Neshatul Haque
PhD, Dpt of Biotechnology
university of hyderabad
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