Hi James - If I understand you correctly, you just need to give a selection
argument to the save command.
save ligand1.pdb, sele1
save ligand2.pdb, sele2
etc...
See http://pymolwiki.org/index.php/Save for more info.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Avenue
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/
On Dec 6, 2013, at 12:03 PM, James Starlight
<jmsstarli...@gmail.com<mailto:jmsstarli...@gmail.com>>
wrote:
Dear PyMol users!
I'd be thankfull if you provide me with the easliest way how I could save
selection to the separate pdbs. For example I've loaded 10 pdbs of the receptor
and selected from in each 10 ligands. This selection is defined in one object
(extracted or coppied from sele). How I could save it as 10 pdbs?
Also I have a question about addtion of the hyrogens to each ligand in
ensemble. How I could add hydrogens in accordance to the specified protonation
states of the ligands (manually providing total charge)?
Thanks for help,
James
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