Hi Ritesh,
Assuming you want the PDB files to end up in one object and they are
numbered like file0.pdb .. file1000.pdb
for i in range(0,1000,100): cmd.load("file%d.pdb"%i,"traj")
You can set the step size from 100 to 50, 25, ...
One thing that you may want to ask yourself is whether you need all the
water. The visualization will be a lot smoother without.
@Jason, feature request: Adding a selection (or exclusion) argument to load
:) That could prevent work and file-clutter when handling simulation data.
Cheers,
Tsjerk
On Fri, Jan 17, 2014 at 12:08 AM, Ritesh Kumar <ritesh1...@gmail.com> wrote:
> Dear All,
>
> I have around 1000 PDB files generated from the MD simulation. Each file
> is around 32 MB in size.
>
> What I am trying to do:
>
> a) Load every 100th pdb file automatically and analyze the data.
>
> b) I am also trying to customize the load list, for example from 100 to
> say 50 or 25 or 10 like this.
>
> Any help would be greatly appreciated.
>
> Thanks
> RK
>
>
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--
Tsjerk A. Wassenaar, Ph.D.
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