Hello, On 05/11/13 15:34, Jason Vertrees wrote: > Hi Jerome, > > PyMOL doesn't yet handle cyclic peptides. It's an open case we hope to > resolve soon.
PyMOL 1.7 seems to handle them partially: I have just tried with 2ns4, the formally missing bond is present now (thanks a lot), but the ribbon is still open. To what expand the handling of cyclic peptides is and will be supported ? Best wishes, Jerome > > Cheers, > > -- Jason > > On Tue, Nov 5, 2013 at 1:47 AM, Jerome BENOIT <g62993...@rezozer.net> wrote: >> Hello Again, >> >> let rephrase my question: >> does PyMOL have support for cyclic peptide (ex. 2NS4) ? >> >> Thanks, >> Jerome >> >> On 29/10/13 17:37, Jerome BENOIT wrote: >>> Hello List, >>> >>> So far I use PyMOL to visualize polygonal chain through an expurged PDB >>> data file when the chain is not ring. >>> Now I would like to visualize chain rings: what is the best way to make >>> PyMOL understand that the two end points coincide ? >>> >>> Thanks in advance, >>> Jerome >>> >>> ------------------------------------------------------------------------------ >>> Android is increasing in popularity, but the open development platform that >>> developers love is also attractive to malware creators. Download this white >>> paper to learn more about secure code signing practices that can help keep >>> Android apps secure. >>> http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.clktrk >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> ------------------------------------------------------------------------------ >> November Webinars for C, C++, Fortran Developers >> Accelerate application performance with scalable programming models. Explore >> techniques for threading, error checking, porting, and tuning. Get the most >> from the latest Intel processors and coprocessors. See abstracts and register >> http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > ------------------------------------------------------------------------------ Android apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
