Dear Pymol users,
I have encountered a problem while trying to install pymol from the source
code on Centos 7.
I am running the following script for installation:
*****
#!/bin/bash -e
prefix=/home/christos/PROGRAMS/PYMOL/OPEN-SOURCE/pymol
modules=$prefix/modules
python setup.py build install \
--home=$prefix \
--install-lib=$modules \
--install-scripts=$prefix
****
and I get the following error:
*********************************************
python2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so
/usr/bin/ld: skipping incompatible /usr/lib/libGL.so when searching for -lGL
/usr/bin/ld: skipping incompatible
/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../libGL.so when searching for
-lGL
/usr/bin/ld: skipping incompatible /lib/libGL.so when searching for -lGL
/usr/bin/ld: skipping incompatible /usr/lib/libGL.so when searching for -lGL
/usr/bin/ld: cannot find -lGL
collect2: error: ld returned 1 exit status
error: command 'g++' failed with exit status 1
******************************************
I have been unable to overcome this problem. I think it is related with the
fact that I installed NVIDIA drivers on my system but cannot be sure.
Does anyone have any suggestions regarding the error I am getting?
I have installed all but one dependencies with the command:
yum install subversion gcc gcc-c++ kernel-devel python-devel tkinter
python-pmw glew-devel freeglut-devel libpng-devel freetype-devel
The package python-pmw was not found so I had to manually install that one.
I also tried to do
yum install pymol
however there was no pymol package available.
Is there a repository for centos 7 that includes pymol?
Thank you for considering my problem,
Christos Deligkaris, PhD
Assistant Professor of Physics, Drury University
900 N Benton Ave, Springfield MO, 65802
Office Phone: (417) 873-7234
www2.drury.edu/christos <http://www2.drury.edu/christos/index.html>
@DeligkarisGroup <https://twitter.com/DeligkarisGroup> +ChristosDeligkaris
<http://google.com/+ChristosDeligkaris>
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