Why don't you to modify the show_bump.py file?
You could try playing with the line
cmd.show_as('cgo', name)
and change cgo to, for exemple, dots
and see what happens.Cheers On 8/29/14 4:30 PM, Bondurant wrote: > Hello community, > I would like to draw a figure similar to this one > http://www.cell.com/cms/attachment/615980/4968633/gr1.jpg > showing the clashes between a potential ligand and the protein. The only > way i know how to do this in pymol is using the show_bumps plugin, but i > don't really like the "red disks" format. > Could anyone tell me how i could easily draw something similar to those > red spikes from the example to represent the clashes in pymol or any > other program? I'm able to do it using molprobity and kinemage, but > there's no much possibilities for editing and to get it in printing quality. > Thanks > > > ------------------------------------------------------------------------------ > Slashdot TV. > Video for Nerds. Stuff that matters. > http://tv.slashdot.org/ > > > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Gianluca Santoni, Dynamop Group Institut de Biologie Structurale 6 rue Jules Horowitz 38027 Grenoble Cedex 1 France _________________________________________________________ Please avoid sending me Word or PowerPoint attachments. See http://www.gnu.org/philosophy/no-word-attachments.html ------------------------------------------------------------------------------ Slashdot TV. Video for Nerds. Stuff that matters. http://tv.slashdot.org/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
