Hi, I was comparing two very similar structures and I got the following results:
align pdb1, pdb2, cycles=0 0.38 align pdb1, pdb2 and name ca, cycles=0 0.05 align pdb1, pdb2 and name ca+cb+c+n, cycles=0 0.07 align pdb1, pdb2 and name ca+cb+c+n+o, cycles=0 9.8 I wonder why the addition of the O atom increases the RMSD so much esp when all atom RMSD is only 0.38A. Thank you ____________________________________________________________ FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! Check it out at http://www.inbox.com/earth ------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://p.sf.net/sfu/Zoho _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
