Hi Matt, looks like a partial build after header changes. Please remove the "build" directory and rebuild (our setup.py is not tracking header dependancies when doing incremental builds).
Thanks, Thomas On 20 Oct 2014, at 19:10, Matthew Baumgartner <mp...@pitt.edu> wrote: > Hi, > I updated pymol to r4098 and now it crashes on launch. I'm assuming that > it was something I did, but I can't figure out what. > Thanks for your help, > Matt > > $ pymol > Traceback (most recent call last): > File "/usr/local/lib/python2.7/dist-packages/pymol/__init__.py", line > 71, in <module> > import pymol > File "/usr/local/lib/python2.7/dist-packages/pymol/__init__.py", line > 533, in <module> > import pymol._cmd > ImportError: /usr/local/lib/python2.7/dist-packages/pymol/_cmd.so: > undefined symbol: _Z27OVLexicon_BorrowFromCStringP10_OVLexiconPc > > > The install process seems to go fine except for the git thing (I checked > it out using svn). > > $ sudo python setup.py build install > fatal: Not a git repository (or any parent up to mount point /home) > Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). > running build > running build_py > running build_ext > running install > running install_lib > running install_egg_info > Removing /usr/local/lib/python2.7/dist-packages/pymol-1.7.3.1.egg-info > Writing /usr/local/lib/python2.7/dist-packages/pymol-1.7.3.1.egg-info > copying data -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/data > copying test -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/test > copying scripts -> > /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/scripts > copying examples -> > /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/examples -- Thomas Holder PyMOL Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://p.sf.net/sfu/Zoho _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
