Hi,
I maintain a list of science applications that work under El Capitan
(http://www.macinchem.org/blog/files/c92b0faf48c1bb7dee5eeba1260cff43-1657.php)
and I tried a pre installed version of Pymol and it worked without issue.
However I have had a few readers email me saying they are having problems so I
took a new machine running El Capitan and tried to instal a variety of
cheminformatics tools including Pymol using Homebrew and PIP as described here
(http://www.macinchem.org/reviews/cheminfo/cheminfoMac.php). All worked fine
except Pymol which opened but crashed with the following error.
Username:~ prompt$ pymol
PyMOL(TM) Molecular Graphics System, Version 1.7.6.0.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable scientific
software by purchasing a PyMOL Maintenance and/or Support subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
Detected OpenGL version 2.0 or greater. Shaders available.
Detected GLSL version 1.20.
OpenGL graphics engine:
GL_VENDOR: NVIDIA Corporation
GL_RENDERER: NVIDIA GeForce 8600M GT OpenGL Engine
GL_VERSION: 2.1 NVIDIA-10.0.40 310.90.10.05b12
Detected 2 CPU cores. Enabled multithreaded rendering.
libpng warning: Application built with libpng-1.6.19 but running with 1.5.23
/usr/local/bin/pymol: line 4: 3628 Segmentation fault: 11
"/usr/local/opt/python/bin/python2.7"
"/usr/local/Cellar/pymol/1.7.6.0/libexec/lib/python2.7/site-packages/pymol/__init__.py"
"$@“
Any suggestions?
Cheers
Chris------------------------------------------------------------------------------
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