Thanks for the feedback, Folmer!
I am using CentOS. I already used --use-msgpackc=no and it did not improve. gcc
--version gives me 4.8.5 (I cannot update more). Do you think it would be
worth it to install gcc 4.9? On the install page there was said that a
regression to 4.4 could work, but I don’t know.
Anyone else using CentOS having problems with pymol installation?
Thanks,
João
On Wed, Mar 29, 2017 at 10:35 AM, Folmer Fredslund <folm...@gmail.com>
wrote:
> Hi João,
>
> On Ubuntu 16.04 (you didn't mention what you were running) with gcc-4.9
> and "--use-msgpackc=no" I get a working pymol with revision 4170.
>
> Have you tried creating a new user and test pymol from that account? That
> should help you identify if it is solely a problem with your own account.
>
> HTH,
> Folmer
>
>
> On 2017-03-28 03:15, João M. Damas wrote:
>
> Nobody experiencing the same issues? Any tips on what I may be doing wrong
> on the installation?
>
> João
>
> On Fri, Mar 17, 2017 at 4:08 PM, João M. Damas <jmda...@itqb.unl.pt>
> wrote:
>
>> Dear all,
>>
>> I started experiencing segmentation fault on a pymol that I had installed
>> through the omnia channel on conda.
>>
>> Then, I decided to install from scratch using this recipe:
>> https://pymolwiki.org/index.php/Linux_Install#Get_latest_source_from_SVN
>>
>> Still getting the segmentation fault, so maybe something changed in my
>> system and it's conflicting with?
>>
>> The segmentation fault is not on launching PyMOL, but rather when I do
>> stuff: loading a PDB file, building a fragment. Like this:
>>
>> ```
>> ./pymol: line 3: 28505 Segmentation fault "/usr/bin/python2.7"
>> "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py" "$@"
>> ```
>>
>> Curiously, when I load a 1.740 session (.pse file I had saved), it works
>> (no segmentation fault), I can even perform commands like select and stuff,
>> and they work. If I load a more recent 1.803 session, it also seg faults:
>>
>> ```
>> Executive: Loading version 1.803 session...
>> ./pymol: line 3: 29221 Segmentation fault "/usr/bin/python2.7"
>> "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py" "$@"
>> ```
>>
>> Any clues? Am I doing something wrong?
>>
>> Thanks,
>> João
>>
>> --
>> João M. Damas
>> PhD Student
>> Protein Modelling Group
>> ITQB-UNL, Oeiras, Portugal
>> Tel:+351-214469613 <21%20446%209613>
>>
>
>
>
> --
> João M. Damas
> PhD Student
> Protein Modelling Group
> ITQB-UNL, Oeiras, Portugal
> Tel:+351-214469613 <21%20446%209613>
>
>
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--
João M. Damas
PhD Student
Protein Modelling Group
ITQB-UNL, Oeiras, Portugal
Tel:+351-214469613
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