I'm not sure I understand your question. You just want to have the otho
slices displayed in another window? I can think of another pyqtgraph app
that does similar: ccfviewer[1]. In particular, I imagine something to do
with AtlasSliceView.update_slice_image might be what you're looking for.

[1]
https://github.com/AllenInstitute/ccfviewer/blob/308bae7145e4bd101e25550efc55c1a1bcb95bf5/aiccf/ui.py#L74

On Thu, Jul 22, 2021 at 3:24 AM Kai Winkler <[email protected]>
wrote:

> Hey, I have 2 3D datasets that I can register manually and I wondered if
> there is an option to generate a new window (which is not the issue) where
> an orthoslice of both datasets can be plotted (that is the problem).
> I dont want the original data to be plotted but the transformed
> graphicsitem.
>
> is it possible?
>
> Thank you!
>
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