Hi,

Why do you assume that "/usr/include" gets lost somehow?

In the log snippets you provided on the issue, "-I/usr/include" can clearly be 
found.

I assume you meant to say that "-I/app/lib" should actually be passed as well?

The include flags that are passed to libclang are queried via something like 
"g++ -E -x c++ - -v </dev/null".
The code is in sources/shiboken2/ApiExtractor/clangparser/compilersupport.cpp

Perhaps consider attaching a fresh full new build log to the issue.

On 4. Oct 2018, at 17:44, Michael Hill 
<[email protected]<mailto:[email protected]>> wrote:

For building a FreeCAD flatpak using Qt 5, Pyside2 seems to lose track of some 
header files:

https://bugreports.qt.io/browse/PYSIDE-787

Alexandru has already commented on the bug.

Inside the build environment, the include directories map to /app/include and 
/usr/include. As I understand it, that's "dependencies just built" for the 
first, and "things provided by org.kde.Sdk" for the second. If I grep for the 
missing declarations, they all appear to be present under /usr/include.

In the (now successful) Qt 4 version of the flatpak, FreeCAD initially had a 
similar error. Bastien fixed it with this patch:

https://github.com/flathub/flathub/pull/618/commits/4e459030db373342498993cfe1bc9ca0873a067e

If that's what's happening, can someone suggest where to try to patch Pyside2 
so that it doesn't lose track of /usr/include?

Thanks,

Mike
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