[Pytables-users] Re: RE: [ANN] PyTables 1.2.2 released

[Huayin Wang]

Hi Francesc,
This is what I get by running: python test/test_all.py

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PyTables version:  1.2.2
HDF5 version:      1.6.2
numarray version:  1.5.1
Zlib version:      1.1.4
LZO version:       1.08 (Jul 12 2002)
UCL version:       1.02 (Dec 18 2003)
BZIP2 version:     1.0.2 (30-Dec-2001)
Python version:    2.3.4 (#7, Jul  9 2004, 21:47:06)
[GCC 3.2 20020903 (Red Hat Linux 8.0 3.2-7)]
Platform:          linux2-i686
Byte-ordering:     little
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Performing only a light (yet comprehensive) subset of the test
suite.  If you have a big system and lots of CPU to waste and want to
do a more complete test, try passing the --heavy flag to this script.
The whole suite will take more than 10 minutes to complete on a
relatively modern CPU and around 100 MB of main memory.
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Numeric (version 23.1) is present. Adding the Numeric test suite.
Scientific.IO.NetCDF not found. Skipping HDF5 <--> NetCDF conversion tests.
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...........................................................................................HDF5-DIAG: Error detected in HDF5 library version: 1.6.2 thread 0.  Back trace follows.
  #000: H5S.c line 1727 in H5Screate_simple(): zero sized dimension for non-unlimited dimension
    major(01): Function arguments
    minor(05): Bad value
E..HDF5-DIAG: Error detected in HDF5 library version: 1.6.2 thread 0.  Back trace follows.
  #000: H5S.c line 1727 in H5Screate_simple(): zero sized dimension for non-unlimited dimension
    major(01): Function arguments
    minor(05): Bad value
E......HDF5-DIAG: Error detected in HDF5 library version: 1.6.2 thread 0.  Back trace follows.
  #000: H5S.c line 1727 in H5Screate_simple(): zero sized dimension for non-unlimited dimension
    major(01): Function arguments
    minor(05): Bad value
EHDF5-DIAG: Error detected in HDF5 library version: 1.6.2 thread 0.  Back trace follows.
  #000: H5S.c line 1727 in H5Screate_simple(): zero sized dimension for non-unlimited dimension
    major(01): Function arguments
    minor(05): Bad value
EHDF5-DIAG: Error detected in HDF5 library version: 1.6.2 thread 0.  Back trace follows.
  #000: H5Shyper.c line 5837 in H5Sselect_hyperslab(): unable to set hyperslab selection
    major(14): Dataspace interface
    minor(27): Unable to initialize object
  #001: H5Shyper.c line 5726 in H5S_select_hyperslab(): can't generate hyperslabs
    major(14): Dataspace interface
    minor(45): Unable to insert object
  #002: H5Shyper.c line 5347 in H5S_generate_hyperslab(): can't create hyperslab information
    major(14): Dataspace interface
    minor(45): Unable to insert object
  #003: H5Shyper.c line 5095 in H5S_hyper_make_spans(): can't allocate hyperslab span
    major(02): Resource unavailable
    minor(06): No space available for allocation
  #004: H5FL.c line 309 in H5FL_reg_malloc(): memory allocation failed
    major(02): Resource unavailable
    minor(06): No space available for allocation
  #005: H5FL.c line 142 in H5FL_malloc(): memory allocation failed for chunk
    major(02): Resource unavailable
    minor(06): No space available for allocation
Traceback (most recent call last):
  File "test/test_all.py", line 139, in ?
  File "/usr/local/lib/python2.3/unittest.py", line 721, in __init__
  File "/usr/local/lib/python2.3/unittest.py", line 758, in runTests
  File "/usr/local/lib/python2.3/unittest.py", line 658, in run
  File "/usr/local/lib/python2.3/unittest.py", line 389, in __call__
  File "/usr/local/lib/python2.3/unittest.py", line 389, in __call__
  File "/usr/local/lib/python2.3/unittest.py", line 389, in __call__
  File "/usr/local/lib/python2.3/unittest.py", line 389, in __call__
  File "/usr/local/lib/python2.3/unittest.py", line 236, in __call__
  File "/usr/local/lib/python2.3/unittest.py", line 613, in addError
  File "/usr/local/lib/python2.3/unittest.py", line 107, in addError
  File "/usr/local/lib/python2.3/unittest.py", line 128, in _exc_info_to_string
  File "/usr/local/lib/python2.3/traceback.py", line 140, in format_exception
  File "/usr/local/lib/python2.3/traceback.py", line 75, in format_tb
  File "/usr/local/lib/python2.3/traceback.py", line 102, in extract_tb
MemoryError
HDF5: infinite loop closing library
      D,G,A,S,T,D,G,S,F,D,G,A,S,T,G,F,AC,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL