Francesc Altet wrote:

El dc 08 de 03 del 2006 a les 13:25 -0800, en/na Andrew Straw va
escriure:
Well, I've implemented an exit function using the atexit.register() function to properly close the file, at least where possible. I suspect this would have saved me from my rather careless action, but I don't plan on depending on this in the future -- I hope this will be a last-resort feature of my code rather than a heavily-depended upon feature. :)

Anyhow, perhaps pytables could do something similar internally -- maintain a list of open files and register its own exit function with atexit.register() to make sure this sort of thing could be prevented in the future? It won't prevent against all unexpected program closes (e.g. signals) but my preliminary tests shows it does get called with ctrl-c. It should only be a few lines of code.

Right, in fact I thought about something like this some time ago, but
never implemented it :-(

Well, thanks for the suggestion! We will definitely look forward to
include it in forthcoming 1.3 release.
That sounds great -- I look forward to it.

On another note, it seems like part of the issue is that I was used to an older version of pytables (I think from 20050715 or so) in which the .h5 files seemed to be in an internally consistent state 99+% of the time, even while the app had them open. For example, I could make a copy of the still-growing .h5 file and open it with my analysis tools, and I never had the corrupt file issue. (Or do a simple h5ls on the file.) Now, however, with the 20060306 snapshot, I haven't once been able to do this. Can you think of anything different in pytables that may lead to this behavior? Is there anything I can do in my application like call h5file.sync() or something to attempt to force the file to be internally consistent?

BTW, I don't think it's my hdf5 implementation that has changed -- I haven't upgraded that. I'm using the standard 1.6.2 installed with debian sarge.

Cheers!
Andrew


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