Hi Francesc , test numeric runs now without failures and none of the other failures are showstoppers for my goals, however: here is a run with -v verbose
Regards, Carl > --- Ursprüngliche Nachricht --- > Von: Francesc Altet <[EMAIL PROTECTED]> > An: "Carl Dr. Kleffner" <[EMAIL PROTECTED]> > Kopie: [email protected] > Betreff: Re: [Pytables-users] [pytables-user] some tests fails > with Python-2.3 on windows > Datum: Wed, 05 Apr 2006 11:58:33 +0200 > > Hi Carl, > > I think you have an outdated version of Numeric. Try with the last one > (24.2). > > Cheers, > Summary ======= PyTables version: 1.3 HDF5 version: 1.6.5 numarray version: 1.5.1 Zlib version: 1.1.4 BZIP2 version: 1.0.3 (15-Feb-2005) Python version: 2.3.5 (#62, Feb 8 2005, 16:23:02) [MSC v.1200 32 bit (Intel)] Byte-ordering: little Numeric version: 24.2 numpy version: 0.9.6 test_numpy: 9 Errors: KeyError: 'UInt64' in numarray\ufunc.py", line 1605 test_create: segfault: Checking inheritance of filters on trees (open file version) test_indexes: segfault: Checking reading an Index (string flavor) ... HDF5: infinite loop closing library test_carray: segfault: Checking read() of chunked layout arrays ... HDF5: infinite loop closing library test_earray: segfault: Checking enlargeable array iterator ... test_vlarray: segfault: Checking vlarray read ... HDF5: infinite loop closing library All segfaults are in LZO testcases (LZO is not installed on my system) However, the tests should not segfault in my opinion. _________________________________________________________________________ test_numpy: 9 Errors: KeyError: 'UInt64' in numarray\ufunc.py", line 1605 _________________________________________________________________________ ====================================================================== ERROR: None (__main__.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 115, in test02_types self.WriteRead(a) File "test_numpy.py", line 79, in WriteRead assert allequal(a,b, "numpy") File "C:\tests\pytables-1.3\tables\tests\common.py", line 154, in allequal result = (a == b) File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 921, in _cache_miss2 mode, win1, win2, wout, cfunc, ufargs = \ File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 980, in _setup inputs = (_InputConverter(inarr1, convtypes[0]), File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1735, in __init__ _Converter.__init__(self, arr, type, inbuffer, forcestride) File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 135, in test03_types_nc self.WriteRead(b) File "test_numpy.py", line 79, in WriteRead .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 115, in test02_types self.WriteRead(a) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 135, in test03_types_nc self.WriteRead(b) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 115, in test02_types self.WriteRead(a) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 135, in test03_types_nc self.WriteRead(b) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 115, in test02_types self.WriteRead(a) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ====================================================================== ERROR: None (__main__.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 135, in test03_types_nc self.WriteRead(b) .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ===================================================================== ERROR: None (__main__.GroupsArrayTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "test_numpy.py", line 248, in test00_iterativeGroups if not allequal(a,b, "numpy") and verbose: .... File "C:\Python23\Lib\site-packages\numarray\ufunc.py", line 1605, in __init__ self.convfunction = \ KeyError: 'UInt64' ___________________________________________________________________________________ test_create: segfault: Checking inheritance of filters on trees (open file version) ___________________________________________________________________________________ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Running FiltersCase2.test00_checkFilters... Test filter: Filters(complevel=1, complib='bzip2', shuffle=1, fletcher32=0) Filters in file: Filters(complevel=1, complib='bzip2', shuffle=1, fletcher32=0) Test gfilter: Filters(complevel=1, complib='zlib', shuffle=1, fletcher32=0) Filters in file: Filters(complevel=1, complib='zlib', shuffle=1, fletcher32=0) Test filter: Filters(complevel=1, complib='bzip2', shuffle=1, fletcher32=0) Filters in file: Filters(complevel=1, complib='bzip2', shuffle=1, fletcher32=0) C:\Python23\lib\site-packages\tables\Leaf.py:103: UserWarning: lzo compression library is not available. Using zlib instead!. warnings.warn( \ Checking setting large string attributes (File methods) ... ok Checking setting large string attributes (Node methods) ... ok Checking setting large string attributes (AttributeSet methods) ... ok ..... Checking setting Object attributes ... ok Checking overwriting attributes ... ok Checking inheritance of filters on trees (open file version) ... ok Checking inheritance of filters on trees (close file version) ... ok Checking inheritance of filters on trees (open file version) ... >>>> segfault here <<< _________________________________________________________________________________________________________ test_indexes: segfault: Checking reading an Index (string flavor) ... HDF5: infinite loop closing library _________________________________________________________________________________________________________ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Running LZOReadTestCase.test10b_moveIndex... Before move var1 index column: Index(10, shape=(1L, 10L), chunksize=10) After move var1 column: Index(10, shape=(1L, 10L), chunksize=10) Selected values: [0L, 1L] Should look like: [0L, 1L] Number of written rows: 10 Number of indexed rows: 10 Checking reading an Index (string flavor) ... ok Checking reading an Index (bool flavor) ... ok Checking reading an Index (int flavor) ... ok Checking reading an Index (float flavor) ... ok .... Checking moving a table with an index ... ok Checking moving a table with an index (persistent version) ... ok Checking reading an Index (string flavor) ... c:\Python23\lib\site-packages\tables\Leaf.py:103: UserWarning: lzo compression library is not available. Using zlib instead!. warnings.warn( \ ok Checking reading an Index (bool flavor) ... ok Checking reading an Index (int flavor) ... ok Checking reading an Index (float flavor) ... ok .... Checking removing an index (persistent version) ... ok Checking moving a table with an index ... ok Checking moving a table with an index (persistent version) ... ok Checking reading an Index (string flavor) ... HDF5: infinite loop closing library D,G,A,S,T,D,G,F,D,G,A,S,T,G,F,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL >>>> segfault here <<< _______________________________________________________________________________________________________ test_carray: segfault: Checking read() of chunked layout arrays ... HDF5: infinite loop closing library _______________________________________________________________________________________________________ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Running LZOShuffleTestCase.test03_setitemCArray... CArray descr: /carray1 (CArray(20L, 30L), shuffle, zlib(1)) 'LZOShuffleTestCase' atom = Atom(dtype='Int32', shape=(100, 100), flavor='numarray') nrows = 20 flavor = 'numarray' byteorder = 'little' shape of read array ==> (20L, 30L) .... Checking read() of chunked layout arrays ... ok Checking chunked layout array __getitem__ special method ... ok Checking chunked layout array __setitem__ special method ... ok Checking read() of chunked layout arrays ... ok Checking chunked layout array __getitem__ special method ... ok Checking chunked layout array __setitem__ special method ... ok Checking read() of chunked layout arrays ... HDF5: infinite loop closing library D,G,A,S,T,D,G,F,D,G,A,S,T,G,F,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL >>>> segfault here <<< _______________________________________________________________________________________________________ test_earray: segfault: Checking enlargeable array iterator ... _______________________________________________________________________________________________________ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Running LZOShuffleTestCase.test05_setitemEArray... EArray descr: /earray1 (EArray(2L, 1000L), shuffle, zlib(1)) 'LZOShuffleTestCase' atom = Atom(dtype='Int32', shape=(2L, 0), flavor='numarray') nrows = 1000 extdim = 1 flavor = 'numarray' byteorder = 'little' shape of read array ==> (2L, 1000L) .... Checking read() of enlargeable arrays ... ok Checking enlargeable array __getitem__ special method ... ok Checking enlargeable array __setitem__ special method ... ok Checking enlargeable array iterator ... >>>> segfault here <<< _______________________________________________________________________________________________________ test_vlarray: segfault: Checking vlarray read ... HDF5: infinite loop closing library _______________________________________________________________________________________________________ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Running LZOComprTestCase.test02_appendVLArray... Flavor: numarray Nrows in /vlarray1 : 6 First row in vlarray ==> [1 2] Checking vlarray read ... ok Checking vlarray append ... ok Checking vlarray read ... ok Checking vlarray append ... ok Checking vlarray read ... ok Checking vlarray append ... ok Checking vlarray read ... ok Checking vlarray append ... ok Checking vlarray read ... ok Checking vlarray append ... ok Checking vlarray read ... c:\Python23\lib\site-packages\tables\Leaf.py:103: UserWarning: lzo compression library is not available. Using zlib instead!. warnings.warn( \ ok Checking vlarray append ... ok Checking vlarray read ... HDF5: infinite loop closing library D,G,A,S,T,D,G,F,D,G,A,S,T,G,F,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL >>>> segfault here <<< -- Echte DSL-Flatrate dauerhaft für 0,- Euro*! "Feel free" mit GMX DSL! http://www.gmx.net/de/go/dsl ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 _______________________________________________ Pytables-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/pytables-users
