OS 10.4.7 (intel) My install seems to go fine until setup seems to have trouble recognizing my platform or a certain dir. Any advise would be much appreciated. lhdf5??? See below...
Thank you, Conor Macintosh:~/desktop/pytables-1.3.3 conor$ sudo python setup.py install Password: * Found numarray 1.5.1 package installed. * Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``. * Could not find LZO 2 headers and library; disabling support for it. * Could not find LZO 1 headers and library; disabling support for it. * Could not find UCL headers and library; disabling support for it. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``. running install running build running build_py creating build creating build/lib.macosx-10.4-fat-2.4 creating build/lib.macosx-10.4-fat-2.4/tables copying tables/__init__.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Array.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Atom.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/attributeaccess.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/AttributeSet.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/CArray.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/constants.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/EArray.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/enum.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/exceptions.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/File.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Group.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Index.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/IndexArray.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/IsDescription.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Leaf.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/lrucache.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/nestedrecords.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/NetCDF.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Node.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/nriterators.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/proxydict.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/registry.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/Table.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/undoredo.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/UnImplemented.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/utils.py -> build/lib.macosx-10.4-fat-2.4/tables copying tables/VLArray.py -> build/lib.macosx-10.4-fat-2.4/tables creating build/lib.macosx-10.4-fat-2.4/tables/nodes copying tables/nodes/__init__.py -> build/lib.macosx-10.4-fat-2.4/tables/nodes copying tables/nodes/FileNode.py -> build/lib.macosx-10.4-fat-2.4/tables/nodes creating build/lib.macosx-10.4-fat-2.4/tables/scripts copying tables/scripts/__init__.py -> build/lib.macosx-10.4-fat-2.4/tables/scripts copying tables/scripts/nctoh5.py -> build/lib.macosx-10.4-fat-2.4/tables/scripts copying tables/scripts/ptdump.py -> build/lib.macosx-10.4-fat-2.4/tables/scripts copying tables/scripts/ptrepack.py -> build/lib.macosx-10.4-fat-2.4/tables/scripts running build_ext building 'tables.hdf5Extension' extension creating build/temp.macosx-10.4-fat-2.4 creating build/temp.macosx-10.4-fat-2.4/src gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/hdf5Extension.c -o build/temp.macosx-10.4-fat-2.4/src/hdf5Extension.o src/hdf5Extension.c: In function '__pyx_f_13hdf5Extension_7VLArray__readArray': src/hdf5Extension.c:7165: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness src/hdf5Extension.c:7165: warning: pointer targets in passing argument 4 of 'H5Sselect_hyperslab' differ in signedness src/hdf5Extension.c: In function '__pyx_f_13hdf5Extension_7VLArray__readArray': src/hdf5Extension.c:7165: warning: pointer targets in passing argument 3 of 'H5Sselect_hyperslab' differ in signedness src/hdf5Extension.c:7165: warning: pointer targets in passing argument 4 of 'H5Sselect_hyperslab' differ in signedness src/hdf5Extension.c: In function '__Pyx_Raise': src/hdf5Extension.c:10012: warning: assignment from incompatible pointer type src/hdf5Extension.c: In function '__Pyx_Raise': src/hdf5Extension.c:10012: warning: assignment from incompatible pointer type gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/arraytypes.c -o build/temp.macosx-10.4-fat-2.4/src/arraytypes.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/utils.c -o build/temp.macosx-10.4-fat-2.4/src/utils.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/H5ARRAY.c -o build/temp.macosx-10.4-fat-2.4/src/H5ARRAY.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/H5ARRAY-opt.c -o build/temp.macosx-10.4-fat-2.4/src/H5ARRAY-opt.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/H5VLARRAY.c -o build/temp.macosx-10.4-fat-2.4/src/H5VLARRAY.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -I/usr/include -I/usr/local/include -I/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4 -c src/H5ATTR.c -o build/temp.macosx-10.4-fat-2.4/src/H5ATTR.o gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -g -bundle -undefined dynamic_lookup build/temp.macosx-10.4-fat-2.4/src/hdf5Extension.o build/temp.macosx-10.4-fat-2.4/src/arraytypes.o build/temp.macosx-10.4-fat-2.4/src/utils.o build/temp.macosx-10.4-fat-2.4/src/H5ARRAY.o build/temp.macosx-10.4-fat-2.4/src/H5ARRAY-opt.o build/temp.macosx-10.4-fat-2.4/src/H5VLARRAY.o build/temp.macosx-10.4-fat-2.4/src/H5ATTR.o -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib -L/usr/local/lib64 -L/usr/local/lib -lhdf5 -o build/lib.macosx-10.4-fat-2.4/tables/hdf5Extension.so /usr/bin/ld: warning -L: directory name (/lib64) does not exist /usr/bin/ld: warning -L: directory name (/lib) does not /existusr/bin/ ld/: usrwarning/ bin-/Lld:: directorywarning -Lname: (directory /namelib64 )( /doesusr /notlib64 )exist does/ usrnot/ binexist/ ld/:usr/ bin/warningld :- Lwarning: -directoryL :name directory( /namelib )( /doesusr /notlocal /existlib64 )/ usrdoes/ binnot/ ldexist: /warningusr /-binL/:ld :directory forname architecture( /i386usr //lib64usr)/ bindoes/ ldnot: existcan '/tusr locate/ binfile/ ldfor:: warning --L:lhdf5 directory name (/usr/local/lib64) does not exist /usr/bin/ld: for architecture ppc /usr/bin/ld: can't locate file for: -lhdf5 collect2: ld returned 1 exit status collect2: ld returned 1 exit status lipo: can't open input file: /var/tmp//ccAyT4CO.out (No such file or directory) error: command 'gcc' failed with exit status 1 ------------------------------------------------------------------------- Using Tomcat but need to do more? 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