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Hello,
(I am not subscribed to the mailing list, please include my email if you
respond to this post.)
I just wanted to report my experience installing pytables-2.0.1. I'm
running
gentoo linux on a 64bit amd machine, with gcc-4.2.2. The ebuild I used
is
attached, if anyone is interested.
The first time I built and tested pytables-2, tables.test() reported one
error:
======================================================================
ERROR: None (tables.netcdf3.tests.test_netcdf3.NetCDFFileTestCase2)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.5/site-packages/tables/tests/common.py", line
247,
in newmethod
return oldmethod(self, *args, **kwargs)
File "/usr/lib64/python2.5/site-packages/tables/netcdf3/tests/test_netcdf3.py",
line 168, in test_h5tonc
nobjects, nbytes = f.nctoh5(self.filenc)
File "/usr/lib64/python2.5/site-packages/tables/netcdf3/__init__.py",
line
478, in nctoh5
var =
self.createVariable(varname,datatype,ncvar.dimensions,least_significant_digit=lsd,filters=filters)
File "/usr/lib64/python2.5/site-packages/tables/netcdf3/__init__.py",
line
294, in createVariable
var =
NetCDFVariable(varname,self,datatype,dimensions,least_significant_digit=least_significant_digit,expectedsize=expectedsize,filters=filters)
File "/usr/lib64/python2.5/site-packages/tables/netcdf3/__init__.py",
line
581, in __init__
raise ValueError, 'datatype must be one
of %s'%_netcdftype_dict.keys()
ValueError: datatype must be one of
['c', 'd', 'f', 'i', 'F', 'l', '1', 's', 'D']
----------------------------------------------------------------------
When I ran tables.test(heavy=True), I got 661 errors, almost all looked
something like this:
======================================================================
ERROR: Testing ``((lbound < c_time64) & (c_time64 <= rbound)) |
((c_extra+1) >
0)``. [#L506]
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib64/python2.5/site-packages/tables/tests/test_queries.py",
line
253, in setUp
fill_table(table, self.shape, self.nrows)
File "/usr/lib64/python2.5/site-packages/tables/tests/test_queries.py",
line
183, in fill_table
row[ncolname] = row[colname] = coldata
File "tableExtension.pyx", line 1290, in
tableExtension.Row.__setitem__
File "tableExtension.pyx", line 128, in
tableExtension.getNestedFieldCache
File "utilsExtension.pyx", line 328, in utilsExtension.getNestedField
ValueError: field named c_int16 not found.
----------------------------------------------------------------------
I installed ctypes-1.0.2, which took care of 660 of the failures. Should
a
ctypes version be listed in the manual as a prerequisite? Is the netcdf
error
a known pytables bug, or is it maybe a configuration issue on my end?
Thank you,
Darren
--
>0,0< Francesc Altet http://www.carabos.com/
V V Cárabos Coop. V. Enjoy Data
"-"
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
NEED_PYTHON=2.4
inherit distutils
DESCRIPTION="Module for Python that use HDF5"
SRC_URI="http://www.pytables.org/download/stable/${P}.tar.gz";
HOMEPAGE="http://www.pytables.org/moin/PyTables";
SLOT="0"
KEYWORDS="~amd64 ~ia64 ~ppc ~x86"
LICENSE="as-is"
IUSE="doc examples lzo"
DOCS="ANNOUNCE.txt RELEASE-NOTES.txt THANKS TODO.txt VERSION"
RDEPEND=">=sys-devel/gcc-3.2
>=sci-libs/hdf5-1.6.5
>=dev-python/ctypes-1.0.2
>=dev-python/numpy-1.0.3
lzo? ( dev-python/python-lzo )"
src_install() {
distutils_src_install
if use examples; then
insinto /usr/share/doc/${PF}
doins -r examples
fi
if use doc; then
cd doc
dohtml -r html/*
docinto text
dodoc text/*
insinto /usr/share/doc/${PF}
doins -r usersguide.pdf scripts/
fi
}
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