A Friday 24 October 2008, Francesc Alted escrigué: > A Friday 24 October 2008, Francesc Alted escrigué: > > > I'm getting errors in h5ls listings with most files using > > > pytables 2.0.4, hdf5 1.8.1, numpy 1.1.1, and python 2.5.2. This > > > includes the provided pytables examples. An example is below. Any > > > ideas as to the cause? > > [clip] > > > Yeah. I can reproduce that here. However, using h5ls from 1.6.x > > series seems to work well (even with files created with PyTables > > linked against HDF5 1.8.x series): > > > > ~/computacio.nobackup/hdf5-1.6.7/hdf5/bin/h5ls -e > > objecttree.h5/group1 array2 Dataset {4} > > table1 Dataset {10/Inf} > > > > Mmmh, I don't know what's happening here. I'll report this to the > > HDF5 people and report back my findings. > > Seems like a bug in HDF5. Here it is what they are saying about it: > > """ > Thanks for the file! I see this behavior, as well, and entered > a bug report. > > We have a release due out in November. It may be too late to > get it fixed for that release, but I'll check on that. > > +--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+ > Barbara Jones > THG Helpdesk > > """ > > I'll keep you informed about how this develops.
This seems fixed in forthcoming HDF5 1.8.2: """ Just letting you know that this bug has been fixed and will be in the next release of HDF5 1.8 (1.8.2). Actually, the developer had noticed it a while back when fixing another problem, so it is already fixed in the latest snapshots, here: ftp://ftp.hdfgroup.uiuc.edu/pub/outgoing/hdf5/snapshots/v18/ +--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+ Barbara Jones THG Helpdesk """ Cheers, -- Francesc Alted ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users