2009/4/20 Francesc Alted <fal...@pytables.org>: > Hello Fredrik, > > A Monday 20 April 2009, Fredrik Fall escrigué: >> Hello >> >> >> I'm very interested in trying out PyTables. However I've seem to have >> run into problems from the start. >> >> I'm very sorry if this is the wrong forum for this question! >> >> >> >> Here goes: >> >> When running the self tests I get: >> >> ~/build/tables-2.1.1/tables/tests > python test_all.py >> Traceback (most recent call last): >> File "test_all.py", line 17, in ? >> import tables >> File >> "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site >>-packages/tables/__init__.py", line 56, in ? >> from tables.utilsExtension import getPyTablesVersion, >> getHDF5Version ImportError: Failure linking new module: >> /Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site- >>packages/tables/utilsExtension.so: Symbol not found: _H5T_STD_I64LE_g >> Referenced from: >> /Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site- >>packages/tables/utilsExtension.so Expected in: dynamic lookup >> >> My python: >> >python -V >> >> Python 2.4.4 >> >> >which python >> >> /Library/Frameworks/Python.framework/Versions/Current/bin/python >> >> >file >> > /Library/Frameworks/Python.framework/Versions/Current/bin/python >> >> /Library/Frameworks/Python.framework/Versions/Current/bin/python: >> Mach-O universal binary with 2 architectures >> /Library/Frameworks/Python.framework/Versions/Current/bin/python (for >> architecture i386): Mach-O executable i386 >> /Library/Frameworks/Python.framework/Versions/Current/bin/python (for >> architecture ppc): Mach-O executable ppc >> >> >> The following seem to indicate to me that the symbol is present >> >> ~/build/tables-2.1.1/ > nm >> /Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site- >>packages/tables/utilsExtension.so >> >> |grep _H5T_STD_I64LE_g >> >> U _H5T_STD_I64LE_g >> >> >> Any hints on what might cause this error, or something I might have >> done wrong? > > Mmh, I'm afraid that we will need more info so as to be able to help > you. Specifically, which version of the HDF5 library do you have and > how have you compiled it? And more importantly, can you tell us how > did you compile PyTables itself (and your version)? >
I've used the latest stable HDF5, 5-1.8.2 downloaded from ftp.hdfgroup.org/HDF5/current/src/hdf5-1.8.2.tar.gz I've built it with ./configure --prefix=/usr/local && make && sudo make install I have attached the output of configure to this mail (if the list supports attachments.) I then set HDF5_DIR=/usr/local and run (as described by the user manual) ~/build/tables-2.1.1 > python setup.py build_ext --inplace * Found numpy 1.3.0 package installed. * Found HDF5 headers at ``/usr/local/include``, library at ``/usr/local/lib``. ... Everything works fine. I then run the test suite (python tables/tests/test_all.py) and get the error message I posted above. If there's any other info about my system or tools you would like, please ask and I will provide it. Best regards /Fredrik
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