Hi there,
I am running 64bit Linux with Python 2.6 and PyTables 2.1.1. When I
import tables, I get the following error:
Python 2.6.2 (release26-maint, Apr 19 2009, 01:58:18)
Type "copyright", "credits" or "license" for more information.
IPython 0.9.1 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object'. ?object also works, ?? prints
more.
In [1]: import tables
HDF5-DIAG: Error detected in HDF5 (1.8.3) thread 0:
#000: H5Z.c line 273 in H5Zregister(): unable to modify predefined
filters
major: Invalid arguments to routine
minor: Bad value
Perhaps anyone can tell me where that comes from? I can still use
tables, and my scripts seem to be working fine, though.
I'm running HDF 1.8.3 libraries; I attached the output of ``h5c++
-showconfig`` to give more details.
Any help is greatly appreciated :)
Cheers,
Andreas.
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.8.3
Configured on: Mon Jun 8 12:57:25 CEST 2009
Configured by: hilb...@rodin
Configure mode: production
Host system: x86_64-unknown-linux-gnu
Uname information: Linux rodin 2.6.24-23-generic #1 SMP Wed Apr 1
21:43:24 UTC 2009 x86_64 GNU/Linux
Byte sex: little-endian
Libraries:
Installation point: /usr/local/
Compiling Options:
------------------
Compilation Mode: production
C Compiler: /usr/bin/gcc (gcc-4.2.4)
CFLAGS/H5_CFLAGS: /-std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs
-Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute
-Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2
-Wunreachable-code -Wendif-labels -Wdeclaration-after-statement
-Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self
-Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros
-Wunsafe-loop-optimizations -Wc++-compat -Wvolatile-register-var
-Wstrict-overflow -O -fomit-frame-pointer -finline-functions
CPPFLAGS/H5_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE / -DNDEBUG -UH5_DEBUG_API
Shared Libraries: yes
Static Libraries: yes
Statically Linked Executables: no
Extra libraries: -lz -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
----------
Fortran: no
C++: yes
C++ Compiler: g++
C++ Flags:
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
GPFS: no
Strict File Format Checks: no
Optimization Instrumentation: no
Linux Large File Support (LFS): yes
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