Dear, All.
I recently install the pytables 2.2 but failed installing this properly.
Would you give me a advice how to deal with this kind of error?
The error message is following as:
Python 2.6.5 (r265:79063, Apr 16 2010, 13:09:56)
[GCC 4.4.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import tables
>>> tables.test()
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 2.2
HDF5 version: 1.8.5-patch1
NumPy version: 1.3.0
Numexpr version: 1.4.1 (not using Intel's VML/MKL)
Zlib version: 1.2.3.3 (in Python interpreter)
LZO version: 2.02 (Oct 17 2005)
Blosc version: 1.0 (2010-07-01)
Python version: 2.6.5 (r265:79063, Apr 16 2010, 13:09:56)
[GCC 4.4.3]
Platform: linux2-i686
Byte-ordering: little
Detected cores: 1
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test suite.
If you want a more complete test, try passing the --heavy flag to this
script
(or set the 'heavy' parameter in case you are using tables.test() call).
The whole suite will take more than 2 minutes to complete on a relatively
modern CPU and around 80 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
tables/filters.py:264: FiltersWarning: compression library ``bzip2`` is not
available; using ``zlib`` instead
% (complib, default_complib), FiltersWarning )
..............................................................................................................................................................................................................................................................................................................................................................................................................................F.F.....................F........HDF5-DIAG:
Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5Dio.c line 174 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: H5Dio.c line 404 in H5D_read(): can't read data
major: Dataset
minor: Read failed
#002: H5Dchunk.c line 1724 in H5D_chunk_read(): unable to read raw data
chunk
major: Low-level I/O
minor: Read failed
#003: H5Dchunk.c line 2737 in H5D_chunk_lock(): data pipeline read failed
major: Data filters
minor: Filter operation failed
#004: H5Z.c line 1095 in H5Z_pipeline(): required filter is not registered
major: Data filters
minor: Read failed
E....................................................................................................................................................................................................................................................................................................................................................F......................F.............................................F......................F..................................................................................................................................................................................................FFF.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F....F........................F....F............................................F............................................................................................................................................................................................................F...........F...................................................................................................................F.....F...........................................................................................................................................................................................................FF.....FF...FF.....................................................................F.....................F.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
======================================================================
ERROR: None (tables.tests.test_backcompat.VLArrayTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_backcompat.py", line 113, in test01_backCompat
assert vlarray2[1] == ['5', '6', '77']
File "tables/vlarray.py", line 617, in __getitem__
return self.read(start, stop, step)[0]
File "tables/vlarray.py", line 752, in read
listarr = self._readArray(start, stop, step)
File "hdf5Extension.pyx", line 1539, in
tables.hdf5Extension.VLArray._readArray (tables/hdf5Extension.c:13309)
HDF5ExtError: VLArray._readArray: Problems reading the array data.
======================================================================
FAIL: None (tables.tests.test_create.FiltersCase1)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_create.py", line 513, in test01_checkFilters
assert repr(gfilters) == repr(object_.filters)
AssertionError
======================================================================
FAIL: None (tables.tests.test_create.FiltersCase2)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_create.py", line 488, in test01_checkFilters
assert repr(filters) == repr(object_.filters)
AssertionError
======================================================================
FAIL: Keeping filters when copying a file.
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_create.py", line 1365, in test01_copyFile
self._test_copyFile()
File "tables/tests/test_create.py", line 1357, in _test_copyFile
self._check_filters(copyf, filters=filters)
File "tables/tests/test_create.py", line 1345, in _check_filters
"node ``%s`` should have filters" % node._v_pathname )
AssertionError: node ``/implicit_no/implicit_no/explicit_yes`` should have
filters
======================================================================
FAIL: None (tables.tests.test_tables.CompressZLIBTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1203, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CompressZLIBShuffleTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1203, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.AllFiltersTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1203, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CompressTwoTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1203, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 4113, in test04_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 4184, in test05_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 4258, in test05b_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.ZlibComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.ZlibShuffleTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.Bzip2ComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.Bzip2ShuffleTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.AllFiltersTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.ZlibComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.Bzip2ComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.ShuffleComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.AllFiltersTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: Reopening a file with tables using enumerated data.
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 226, in test00a_reopen
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: test00b_reopenMD (tables.tests.test_enum.EnumTableTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 242, in test00b_reopenMD
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: Reopening a file with extendable arrays using enumerated data.
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 403, in test00a_reopen
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: test00b_reopenMD (tables.tests.test_enum.EnumEArrayTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 421, in test00b_reopenMD
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: Reopening a file with variable-length arrays using enumerated data.
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 503, in test00a_reopen
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: test00b_reopenMD (tables.tests.test_enum.EnumVLArrayTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_enum.py", line 521, in test00b_reopenMD
"Enumerated type was not restored correctly from disk.")
AssertionError: Enumerated type was not restored correctly from disk.
======================================================================
FAIL: Checking representation of a nested Table
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_nestedtypes.py", line 701, in test00a_repr
""")
AssertionError
======================================================================
FAIL: test (tables.tests.test_hdf5compat.EnumTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_hdf5compat.py", line 45, in test
self._test()
File "tables/tests/test_hdf5compat.py", line 67, in _test
self.assertEqual(enum, expectedEnum)
AssertionError: Enum({'\x01': 4, '': 1, '\x98\xda\x82\nE': 3,
'\xd8\x0c\x99\x0b': 2}) != Enum({'BLUE': 2, 'BLACK': 4, 'WHITE': 3, 'GREEN':
1, 'RED': 0})
----------------------------------------------------------------------
Ran 2949 tests in 85.264s
FAILED (failures=27, errors=1)
------------------------------------------------------------------------------
Nokia and AT&T present the 2010 Calling All Innovators-North America contest
Create new apps & games for the Nokia N8 for consumers in U.S. and Canada
$10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store
http://p.sf.net/sfu/nokia-dev2dev
_______________________________________________
Pytables-users mailing list
Pytables-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/pytables-users
