OK
Hmm, can you tell us which is the output of your ./configure for the
HDF5 library? Mine is:
Features:
---------
dmalloc: No
Function Stack Tracing: Disabled
GPFS: No
Strict File Format Checks: Disabled
HDF5 v1.4 Compatibility: No
I/O filters (external): deflate
I/O filters (internal): shuffle,fletcher32
Linux Large File Support (LFS): Enabled
MPE: No
Parallel HDF5: No
Threadsafety: Disabled
High Level library: Enabled
As you see, 'deflate' filter is listed as an external filter. Are you
seeing the same?
Yes, I see the same info in src/libhdf5.settings ( attached ) deflate
is listed as an external filter
SUMMARY OF THE HDF5 CONFIGURATION
=================================
HDF5 Version: 1.6.10
Configured on: Tue Nov 2 23:27:19 CET 2010
Configured by: p...@lp
Configure mode: production
Host system: i686-pc-linux-gnu
Byte sex: little-endian
Libraries: static, shared
Parallel support: no
Installation point: /usr/local/hdf5-1.6.10
Compiler: /usr/bin/gcc (gcc-4.4.3)
Compiler switches: -ansi -O0 -fomit-frame-pointer -finline-functions
-UH5_DEBUG_API -DNDEBUG -I/usr/local/zlib-1.2.5/include -D_LARGEFILE_SOURCE
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE
Extra libraries: -L/usr/local/zlib-1.2.5/lib -lz -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Configure Summary
Compiling Options:
Compilation Mode: Production
C Compiler: gcc
CFLAGS: -ansi -O0 -fomit-frame-pointer
-finline-functions
CPPFLAGS: -UH5_DEBUG_API -DNDEBUG
-I/usr/local/zlib-1.2.5/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE
LDFLAGS: -L/usr/local/zlib-1.2.5/lib
Debug Mode: None
Shared Libraries: Yes
Static Libraries: Yes
Statically Linked Executables: No
Tracing: No
Optimization Instrumentation: No
Languages:
----------
C++: No
Fortran: No
Features:
---------
dmalloc: No
Function Stack Tracing: Disabled
GPFS: No
Strict File Format Checks: Disabled
HDF5 v1.4 Compatibility: No
I/O filters (external): deflate
I/O filters (internal): shuffle,fletcher32
Linux Large File Support (LFS): Enabled
MPE: No
Parallel HDF5: No
Threadsafety: Disabled
High Level library: Enabled
------------------------------------------------------------------------------
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