2011/2/13 Todd Matthews <mtoddmatth...@gmail.com>
> The advice to focus more closely on the setup.py was helpful and the
> initial problem was simply that the --hdf5='/usr/local/hdf5' needed an equal
> sign. But, I am still not sure that the correct libraries are being used.
> The following error appears when opening the hdf file in my python script -
>
>>
>> Warning! ***HDF5 library version mismatched error***
>> The HDF5 header files used to compile this application do not match
>> the version used by the HDF5 library to which this application is linked.
>> Data corruption or segmentation faults may occur if the application
>> continues.
>> This can happen when an application was compiled by one version of HDF5
>> but
>> linked with a different version of static or shared HDF5 library.
>> You should recompile the application or check your shared library related
>> settings such as 'LD_LIBRARY_PATH'.
>> You can, at your own risk, disable this warning by setting the environment
>> variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
>>
>> So, it's not clear that the HDF is installed appropriately. I did set the
>> LD_LIBRARY_PATH which does* not *appear to have any impact.
>
>
Hmm, I'd say that you are linking against a different HDF5 version than it
is found by the dynamic linker. Keep trying using a different
LD_LIBRARY_PATH (this should point to the *lib/* directory of the HDF5
tree).
Luck!
--
Francesc Alted
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