Hi, I'm trying to install pytables and its proving difficult (using MAC OS 10.6.4). I have installed in "/usr/local/hdf5" and set the environment variable $HDF5_DIR to /usr/local/hdf5. When I run setup, I get a warning about not being able to find the HDF5 runtime.
ndmmac149:tables-2.4.0 jflegg$ sudo python setup.py install --hdf5="/usr/local/hdf5" * Found numpy 1.6.1 package installed. * Found numexpr 2.0.1 package installed. * Found Cython 0.17.2 package installed. * Found HDF5 headers at ``/usr/local/hdf5/include``, library at ``/usr/local/hdf5/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. ld: library not found for -llzo2 collect2: ld returned 1 exit status ld: library not found for -llzo2 collect2: ld returned 1 exit status * Could not find LZO 2 headers and library; disabling support for it. ld: library not found for -llzo collect2: ld returned 1 exit status ld: library not found for -llzo collect2: ld returned 1 exit status * Could not find LZO 1 headers and library; disabling support for it. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``. running install running build running build_py creating build creating build/lib.macosx-10.5-i386-2.7 creating build/lib.macosx-10.5-i386-2.7/tables copying tables/__init__.py -> build/lib.macosx-10.5-i386-2.7/tables copying tables/array.py -> build/lib.macosx-10.5-i386-2.7/tables When I import pytables in python, I get the following error message In [1]: import tables --------------------------------------------------------- ImportError Traceback (most recent call last) /Users/jflegg/<ipython-input-1-389ecae14f10> in <module>() ----> 1 import tables /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site- packages/tables/__init__.py in <module>() 28 29 # Necessary imports to get versions stored on the Pyrex extension ---> 30 from tables.utilsExtension import getPyTablesVersion, getHDF5Version 31 32 ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/7.3 /lib/python2.7/site-packages/tables/utilsExtension.so, 2): Symbol not found: _H5E_CALLBACK_g Referenced from: /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site- packages/tables/utilsExtension.so Expected in: flat namespace in /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site- packages/tables/utilsExtension.so Any help would be greatly appreciated. Jennifer ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users