Adam Polkosnik added the comment:

Just tested my patch on mac, and it appears that it didn't work on OSX (and 
likely on other unix platforms too).

Conclusion... os.path.basename() will not do anything to windows paths when 
running on unix.

I'm thinking that instead of bailing at 'File name in directory "%s" and header 
"%s" differ.', the library should just print a warning, and continue.

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<http://bugs.python.org/issue6839>
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