Ned Batchelder added the comment:

I don't believe this is coverage.py's fault, so I don't have an answer to your 
question.  There is no revision of coverage.py that *does* swallow stderr.  
Also, as you can see from the test output, it isn't swallowed, it's not being 
captured where it should be captured, but it is appearing on the terminal.  I 
see more than 60 uses of captured_stderr in the Python test suite. If 
coverage.py were swallowing stderr, I would expect dozens of test failures.  
The problem is more subtle.

If you want, you can bisect against any revision of coverage.py you like, 
perhaps the released 4.2?

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Python tracker <rep...@bugs.python.org>
<http://bugs.python.org/issue29048>
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