Nick Coghlan added the comment:

I think Eryk's diagnosis is correct: this is a straight up bug in the original 
patch, where it's missing the check to only use the new logic when in isolated 
mode (as it's compensating for the fact that there is no extra sys.path[0] 
entry inserted in that case).

I mentioned that on the original issue 
http://bugs.python.org/issue29319#msg285904 but hadn't noticed that the 
relevant check was missing from the applied patch.

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<http://bugs.python.org/issue29723>
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