Luke Campagnola added the comment:
Update: this appears to be the prior exception that causes
_communication_started and _fileobj2ouput to be out of sync:
File "/usr/lib/python3.5/subprocess.py", line 1072, in communicate
stdout, stderr = self._communicate(input, endtime, timeout)
File "/usr/lib/python3.5/subprocess.py", line 1672, in _communicate
self.stdin.flush()
ValueError: flush of closed file
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<http://bugs.python.org/issue30203>
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