Segev Finer added the comment:

We are getting those warnings because distutils builds extension modules 
without /GL (https://msdn.microsoft.com/en-us/library/0zza0de8.aspx) but with 
/LTCG (https://msdn.microsoft.com/en-us/library/xbf3tbeh.aspx). We should 
either add /GL to truly enable whole program optimizations/link-time code 
generation or remove it.

It is added in 
https://github.com/python/cpython/blob/896145d9d266ee2758cfcd7691238cbc1f9e1ab8/Lib/distutils/_msvccompiler.py#L233-L241.

----------
nosy: +Segev Finer
type:  -> behavior
versions: +Python 3.5, Python 3.6, Python 3.7

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Python tracker <rep...@bugs.python.org>
<http://bugs.python.org/issue27790>
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