New submission from Tashrif Billah <tashrifbil...@gmail.com>:
``` 2018-11-06 09:51:27,314 /home/tb571/Downloads/pnlpipe/pnlscripts/wmql.py DEBUG Running ['/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math', '/home/tb571/Downloads/pnlpipe/_data/003_GNX_007/Ukf-003_GNX_007-761f2a551e.vtk', 'tract_remove_short_tracts', '2', '/tmp/tmpq2z9fmfc/ukfpruned.vtk'] Traceback (most recent call last): File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math", line 115, in main tractography, *args.operation_parameters) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py", line 141, in wrapper process_output(out, file_output=file_output) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py", line 176, in process_output tractography_to_file(file_output, output) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/__init__.py", line 85, in tractography_to_file return tractography_to_vtk_file(filename, tractography, **kwargs) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 29, in tractography_to_vtk_file tractography.tracts_data() File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 324, in write_vtkPolyData poly_data = tracts_to_vtkPolyData(tracts, tracts_data=tracts_data) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 267, in tracts_to_vtkPolyData vtk_ids = ns.numpy_to_vtkIdTypeArray(ids, deep=True) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py", line 198, in numpy_to_vtkIdTypeArray return numpy_to_vtk(num_array, deep, vtk.VTK_ID_TYPE) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py", line 137, in numpy_to_vtk assert not numpy.issubdtype(z.dtype, complex), \ File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/numpy/core/numerictypes.py", line 743, in issubdtype FutureWarning, stacklevel=2 File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 101, in _showwarnmsg _showwarnmsg_impl(msg) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 28, in _showwarnmsg_impl text = _formatwarnmsg(msg) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 116, in _formatwarnmsg msg.filename, msg.lineno, line= msg.line) TypeError: custom_formatwarning() got an unexpected keyword argument 'line' ``` ---------- components: Argument Clinic messages: 329363 nosy: larry, tashrifbillah priority: normal pull_requests: 9663 severity: normal status: open title: Typo/trivial mistake in warnings.py (may be related to 2.x to 3.x conversion) type: compile error versions: Python 3.6 _______________________________________ Python tracker <rep...@bugs.python.org> <https://bugs.python.org/issue35178> _______________________________________ _______________________________________________ Python-bugs-list mailing list Unsubscribe: https://mail.python.org/mailman/options/python-bugs-list/archive%40mail-archive.com