New submission from Tashrif Billah <[email protected]>:
```
2018-11-06 09:51:27,314 /home/tb571/Downloads/pnlpipe/pnlscripts/wmql.py DEBUG
Running
['/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math',
'/home/tb571/Downloads/pnlpipe/_data/003_GNX_007/Ukf-003_GNX_007-761f2a551e.vtk',
'tract_remove_short_tracts', '2', '/tmp/tmpq2z9fmfc/ukfpruned.vtk']
Traceback (most recent call last):
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math",
line 115, in main
tractography, *args.operation_parameters)
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py",
line 141, in wrapper
process_output(out, file_output=file_output)
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py",
line 176, in process_output
tractography_to_file(file_output, output)
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/__init__.py",
line 85, in tractography_to_file
return tractography_to_vtk_file(filename, tractography, **kwargs)
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py",
line 29, in tractography_to_vtk_file
tractography.tracts_data()
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py",
line 324, in write_vtkPolyData
poly_data = tracts_to_vtkPolyData(tracts, tracts_data=tracts_data)
File
"/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py",
line 267, in tracts_to_vtkPolyData
vtk_ids = ns.numpy_to_vtkIdTypeArray(ids, deep=True)
File
"/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py",
line 198, in numpy_to_vtkIdTypeArray
return numpy_to_vtk(num_array, deep, vtk.VTK_ID_TYPE)
File
"/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py",
line 137, in numpy_to_vtk
assert not numpy.issubdtype(z.dtype, complex), \
File
"/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/numpy/core/numerictypes.py",
line 743, in issubdtype
FutureWarning, stacklevel=2
File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line
101, in _showwarnmsg
_showwarnmsg_impl(msg)
File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line
28, in _showwarnmsg_impl
text = _formatwarnmsg(msg)
File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line
116, in _formatwarnmsg
msg.filename, msg.lineno, line= msg.line)
TypeError: custom_formatwarning() got an unexpected keyword argument 'line'
```
----------
components: Argument Clinic
messages: 329363
nosy: larry, tashrifbillah
priority: normal
pull_requests: 9663
severity: normal
status: open
title: Typo/trivial mistake in warnings.py (may be related to 2.x to 3.x
conversion)
type: compile error
versions: Python 3.6
_______________________________________
Python tracker <[email protected]>
<https://bugs.python.org/issue35178>
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