Xavier de Gaye <xdeg...@gmail.com> added the comment:

PYTHON_FOR_BUILD does not use PYTHONPATH in the implementation of (closed) PR 
17420 and should fix the current issue as a side effect.

FWIW, PR 17420 fixes cross-compilation of third-party extension modules by 
replacing the complex PYTHON_FOR_BUILD command line set in configure.ac by the 
more simple command:

    "PYTHON_FOR_BUILD='PYTHON_PROJECT_BASE=$(abs_builddir) '$interp"

In this PR finding the path name of the target sysconfigdata module when needed 
is done by the sysconfig module and by distutils using the 
Misc/python-config.sh.in script instead of using PYTHONPATH.

Since PYTHONPATH is not used in PR 17420, the current issue should also be 
fixed by the PR. See also Benedikt OP that provided a hint for the fix.

----------
nosy: +xdegaye

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