New submission from Tomasz Kloczko <[email protected]>:
I;m packaging python modules as rpm packages and just found that package
jupyter-server (1.13.1) when pytest was executed python crashed with call trace
+ /usr/bin/pytest -ra jupyter_server
===========================================================================
test session starts
============================================================================
platform linux -- Python 3.8.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/jupyter_server-1.13.1, configfile:
pyproject.toml
plugins: cov-3.0.0, console-scripts-1.2.0, mock-3.6.1, tornasync-0.6.0.post2,
anyio-3.3.4
collected 581 items
jupyter_server/auth/security.py Fatal Python error: Illegal instruction
Current thread 0x00007f480bd08740 (most recent call first):
File "/usr/lib64/python3.8/site-packages/argon2/low_level.py", line 112 in
hash_secret
File "/usr/lib64/python3.8/site-packages/argon2/_password_hasher.py", line
133 in hash
File
"/home/tkloczko/rpmbuild/BUILD/jupyter_server-1.13.1/jupyter_server/auth/security.py",
line 73 in passwd
File "<doctest jupyter_server.auth.security.passwd[0]>", line 1 in <module>
File "/usr/lib64/python3.8/doctest.py", line 1336 in __run
File "/usr/lib64/python3.8/doctest.py", line 1483 in run
File "/usr/lib64/python3.8/doctest.py", line 1844 in run
File "/usr/lib/python3.8/site-packages/_pytest/doctest.py", line 287 in
runtest
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 162 in
pytest_runtest_call
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3.8/site-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3.8/site-packages/pluggy/_hooks.py", line 265 in __call__
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 255 in
<lambda>
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 311 in
from_call
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 254 in
call_runtest_hook
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 215 in
call_and_report
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 126 in
runtestprotocol
File "/usr/lib/python3.8/site-packages/_pytest/runner.py", line 109 in
pytest_runtest_protocol
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3.8/site-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3.8/site-packages/pluggy/_hooks.py", line 265 in __call__
File "/usr/lib/python3.8/site-packages/_pytest/main.py", line 348 in
pytest_runtestloop
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3.8/site-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3.8/site-packages/pluggy/_hooks.py", line 265 in __call__
File "/usr/lib/python3.8/site-packages/_pytest/main.py", line 323 in _main
File "/usr/lib/python3.8/site-packages/_pytest/main.py", line 269 in
wrap_session
File "/usr/lib/python3.8/site-packages/_pytest/main.py", line 316 in
pytest_cmdline_main
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3.8/site-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3.8/site-packages/pluggy/_hooks.py", line 265 in __call__
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 162
in main
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 185
in console_main
File "/usr/bin/pytest", line 33 in <module>
/var/tmp/rpm-tmp.WmHwan: line 49: 2150294 Illegal instruction (core dumped)
PATH="/home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-server-1.13.1-2.fc35.x86_64/usr/bin:$PATH"
PYTHONDONTWRITEBYTECODE=1 SETUPTOOLS_SCM_PRETEND_VERSION=1.13.1
PYTHONPATH="${PYTHONPATH:-/home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-server-1.13.1-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-server-1.13.1-2.fc35.x86_64/usr/lib/python3.8/site-packages}"
/usr/bin/pytest -ra jupyter_server
I'm using my own Linux distribution (which I';m supporting for may clients) and
I'm still using python 3.8.12.
Here is list of modules installed in build env
[tkloczko@ss-desktop SPECS]$ pip list
Package Version
----------------------------- -------------------
alabaster 0.7.12
anyio 3.3.4
appdirs 1.4.4
argon2-cffi 21.1.0
attrs 21.2.0
Babel 2.9.1
backcall 0.2.0
bleach 4.0.0
build 0.7.0
cffi 1.15.0
chardet 4.0.0
charset-normalizer 2.0.9
coverage 6.2
cycler 0.11.0
dbus-python 1.2.18
decorator 5.1.0
defusedxml 0.7.1
distro 1.6.0
docutils 0.17.1
entrypoints 0.3
extras 1.0.0
fixtures 3.0.0
fonttools 4.28.5
gpg 1.16.0-unknown
html5lib 1.1
idna 3.3
imagesize 1.2.0
importlib-metadata 4.10.0
importlib-resources 5.4.0
iniconfig 1.1.1
ipykernel 6.6.0
ipython 7.30.1
ipython_genutils 0.2.0
ipywidgets 7.6.4
jedi 0.18.1
Jinja2 3.0.3
jsonschema 4.3.2
jupyter-client 7.1.0
jupyter-core 4.9.1
jupyterlab-pygments 0.1.2
kiwisolver 1.3.2
libcomps 0.1.18
lxml 4.7.1
m2r 0.2.1
Mako 1.1.6.dev0
Markdown 3.3.6
markdown-it-py 1.1.0
MarkupSafe 2.0.1
matplotlib 3.5.1
matplotlib-inline 0.1.2
mdit-py-plugins 0.3.0
meson 0.60.2
mistune 0.8.4
mock 4.0.3
myst-parser 0.16.1
nbclient 0.5.9
nbconvert 6.1.0
nbformat 5.1.3
nest-asyncio 1.5.1
notebook 6.4.2
numpy 1.21.4
olefile 0.46
packaging 21.3
pandocfilters 1.5.0
parso 0.8.3
pbr 5.6.0
pep517 0.12.0
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.4.0
pip 21.3.1
pluggy 1.0.0
ply 3.11
prometheus-client 0.12.0
prompt-toolkit 3.0.24
ptyprocess 0.7.0
py 1.11.0
pycparser 2.21
Pygments 2.10.0
PyGObject 3.42.0
pyparsing 3.0.6
pyrsistent 0.18.0
pytest 6.2.5
pytest-console-scripts 1.2.0
pytest-cov 3.0.0
pytest-mock 3.6.1
pytest-tornasync 0.6.0.post2
python-dateutil 2.8.2
pytz 2021.1
PyYAML 6.0
pyzmq 22.2.1
requests 2.26.0
requests-unixsocket 0.2.0
rpm 4.17.0
scour 0.38.2
Send2Trash 1.8.0
setuptools 60.0.0.post20211220
six 1.16.0
smartypants 2.0.1
sniffio 1.2.0
snowballstemmer 2.1.0
Sphinx 4.3.2.dev20211220
sphinxcontrib-applehelp 1.0.2.dev20210802
sphinxcontrib-devhelp 1.0.2.dev20210801
sphinxcontrib_github_alt 1.2
sphinxcontrib-htmlhelp 2.0.0
sphinxcontrib-httpdomain 1.7.0
sphinxcontrib-jsmath 1.0.1.dev20210801
sphinxcontrib-openapi 0.7.0
sphinxcontrib-qthelp 1.0.3.dev20210824
sphinxcontrib-serializinghtml 1.1.5
sphinxemoji 0.1.9
terminado 0.12.1
testpath 0.5.0
testtools 2.5.0
toml 0.10.2
tomli 2.0.0
tornado 6.1
traitlets 5.1.1
typogrify 2.0.7
urllib3 1.26.7
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 1.2.3
wheel 0.37.0
widgetsnbextension 3.5.1
youtube-dl 2021.6.6
zipp 3.6.0
I made terminal dump of the gdb session using script command so by "cat
python_testing_jupyter-server_pytest.log" on current termilnal you may see full
gdb back trace with original colouring.
Please let me know what I can do more to diagnose that issue or if you need
more details.
I can add that exactly that python binary was up to now rock solid on building,
minstalling and testing +800 python modules as rpm packages.
----------
files: python_testing_jupyter-server_pytest.log
messages: 409098
nosy: kloczek
priority: normal
severity: normal
status: open
title: pythin is core dumping with SIGILL in pytest of the jupyter-server
versions: Python 3.8
Added file:
https://bugs.python.org/file50514/python_testing_jupyter-server_pytest.log
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Python tracker <[email protected]>
<https://bugs.python.org/issue46165>
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