why are u reinventing the wheel when Biopython[1] is already existing ? is there any specific reason u wanted to develop this CoreBio ? why dont u just extend the existing BioPython package itself ?
regards,
KM
[1]http://biopython.org
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On 9/11/06, km <
[EMAIL PROTECTED]> wrote:
On 11 Sep 2006 00:59:30 -0700, [EMAIL PROTECTED]
<[EMAIL PROTECTED]> wrote:
>
> Announcing CoreBio 0.4
> ------------------------
> CoreBio home page:
> http://code.google.com/p/corebio/
>
> Download:
> http://corebio.googlecode.com/svn/dist/CoreBio-0.4.1.tar.gz
>
> CoreBio is an open source python library for bioinformatics and
> computational biology, designed to be fast, compact, reliable and easy
> to use. Currently, CoreBio includes code to store and manipulate
> protein and DNA sequences, read and write many common biological
> sequence formats, read blast reports and access other computational and
> database resources.
>
> The CoreBio project welcomes additional suggestions, code and
> participants.
>
> This release includes the following modules:
>
> - data: Standard information used in computational biology.
> - matrix: Arrays indexed by alphabetic strings.
> - moremath: Various bits of useful math not in the standard
>
> python library.
> - resource: Access to programs, complex file formats and
> databases
> - astral: ASTRAL dataset IO.
> - scop: SCOP: Structural Classification of Proteins IO.
> - stride: STRIDE: Protein secondary structure assignment
>
> from atomic coordinates.
> - seq: Alphabetic sequences and associated tools and data.
> - seq_io: Sequence file reading and writing.
> - array_io: Read and write arrays of sequence data.
> - clustal_io: Read the CLUSTAL sequence file format.
> - fasta_io: Read and write FASTA format.
> - genbank_io: Read GenBank flat files.
> - intelligenetics_io: Read IntelliGenetics format.
> - msf_io: Read sequence information in MSF format.
> - nbrf_io: Sequence IO for NBRF/PIR format.
> - nexus_io: Read the sequence data from a nexus file.
> - null_io: Null sequence IO.
> - phylip_io: Read Sequences in interleaved Phylip format.
> - plain_io: Read and write raw, unformatted sequence data.
> - stockholm_io: Read a STOCKHOLM format.
> - table_io: Read tab delimited format.
> - ssearch_io: Parse sequence search analysis reports.
> - blastxml: Read BLAST XML output.
> - fasta: Read the output of a fasta similarity search.
> - transform: Transformations of Seqs (alphabetic sequences),
> including translation with a full suite of
> GeneticCode's.
>
>
> Gavin Crooks and John Gilman
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
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