At Thursday 7/12/2006 05:28, Nathan Harmston wrote:

chr1 SGD gene 5 8 id=1 name=3 dbref=6
chr1 SGD intron 5 6 id=5 notes="spam"
chr1 SGD exon 7 8 id=5

so I was thinking of having a factory class to return the individual
objects for each row......ie

class Factory():
        # if passed a gene return a gene object
        # if passed an intron return an intron object
        # if passed an exom return an exon object

Is this a good way of doing this, or is there a better way to do this
in Python, this is probably the way I d do it in Java.

The basic idea is the same, but instead of a long series of if...elif...else you can use a central registry (a dictionary will do) and dispatch on the name. Classes act as their own factories.

registry = {}

class Base(object):
    kind = "Unknown"
register(Base)

class Gene(Base):
    kind = "gene"
    def __init__(self, *args, **kw): pass
register(Gene)

class Intron(Base):
    kind = "intron"
    def __init__(self, *args, **kw): pass
register(Intron)

def register(cls):
    registry[cls.kind] = cls

def factory(kind, *args, **kw):
    return registry[kind](*args, **kw)

If some arguments are always present, you can name them, you're not limited to use the generic *args and **kw.


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Gabriel Genellina
Softlab SRL
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