Your message dated Mon, 13 Jan 2020 04:23:30 +0000 with message-id <[email protected]> and subject line Bug#948758: Removed package(s) from unstable has caused the Debian Bug report #784547, regarding python-rpy2: LibraryError importing stats package in version 2.5.6-2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 784547: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=784547 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python-rpy2 Version: 2.5.6-2 Severity: normal Dear Maintainer, After upgrading to version 2.5.6-2, importing the stats package generates the following error: rpy2.robjects.packages.LibraryError: The symbol format_perc in the package "stats" is conflicting with a Python object attribute Downgrading to 2.5.6-1 along with all of the r packages to their 2/9/2015 versions avoids this error. Following is an illustration of the bug using a clean debian:unstable docker image upgraded with the latest python-rpy2: ----------- root@530ea8375f99:~# cat rpy2init.py from rpy2 import robjects from rpy2.robjects import Formula from rpy2.robjects.vectors import IntVector, FloatVector, StrVector from rpy2.robjects.lib import grid from rpy2.robjects.packages import importr from rpy2.rinterface import NA_Real base = importr("base") stats = importr("stats") grdevices = importr("grDevices") graphics = importr("graphics") root@530ea8375f99:~# python rpy2init.py Traceback (most recent call last): File "rpy2init.py", line 8, in <module> stats = importr("stats") File "/usr/lib/python2.7/dist-packages/rpy2/robjects/packages.py", line 412, in importr version = version) File "/usr/lib/python2.7/dist-packages/rpy2/robjects/packages.py", line 178, in __init__ self.__fill_rpy2r__(on_conflict = on_conflict) File "/usr/lib/python2.7/dist-packages/rpy2/robjects/packages.py", line 280, in __fill_rpy2r__ super(SignatureTranslatedPackage, self).__fill_rpy2r__(on_conflict = on_conflict) File "/usr/lib/python2.7/dist-packages/rpy2/robjects/packages.py", line 224, in __fill_rpy2r__ 'a Python object attribute') rpy2.robjects.packages.LibraryError: The symbol format_perc in the package "stats" is conflicting with a Python object attribute root@530ea8375f99:~# dpkg -l | grep python-rpy2 ii python-rpy2 2.5.6-2 amd64 Python interface to the GNU R language and environment (version 2) root@530ea8375f99:~# dpkg -l | grep r-base-core ii r-base-core 3.2.0-2 amd64 GNU R core of statistical computation and graphics system root@530ea8375f99:~# dpkg -l | grep python2.7 ii libpython2.7-minimal:amd64 2.7.9-2 amd64 Minimal subset of the Python language (version 2.7) ii libpython2.7-stdlib:amd64 2.7.9-2 amd64 Interactive high-level object-oriented language (standard library, version 2.7) ii python2.7 2.7.9-2 amd64 Interactive high-level object-oriented language (version 2.7) ii python2.7-minimal 2.7.9-2 amd64 Minimal subset of the Python language (version 2.7) root@530ea8375f99:~# -------------- -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (990, 'unstable'), (500, 'testing'), (500, 'stable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 3.16.0-4-amd64 (SMP w/4 CPU cores) Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages python-rpy2 depends on: ii libbz2-1.0 1.0.6-7+b3 ii libc6 2.19-18 ii libgomp1 5.1.1-4 ii liblzma5 5.1.1alpha+20120614-2+b3 ii libpcre3 2:8.35-3.3 ii python 2.7.9-1 ii python-numpy 1:1.8.2-2 ii python-singledispatch 3.4.0.3-1 ii r-base-core 3.1.2-2 ii zlib1g 1:1.2.8.dfsg-2+b1 python-rpy2 recommends no packages. Versions of packages python-rpy2 suggests: pn python-rpy-docs <none> -- no debconf information
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--- Begin Message ---Version: 2.8.6-4+rm Dear submitter, as the package rpy2-2.8 has just been removed from the Debian archive unstable we hereby close the associated bug reports. We are sorry that we couldn't deal with your issue properly. For details on the removal, please see https://bugs.debian.org/948758 The version of this package that was in Debian prior to this removal can still be found using http://snapshot.debian.org/. Please note that the changes have been done on the master archive and will not propagate to any mirrors until the next dinstall run at the earliest. This message was generated automatically; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]. Debian distribution maintenance software pp. Scott Kitterman (the ftpmaster behind the curtain)
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