Your message dated Fri, 24 Dec 2010 16:17:32 +0000
with message-id <[email protected]>
and subject line Bug#598520: fixed in python-scipy 0.8.0+dfsg1-1
has caused the Debian Bug report #598520,
regarding python-scipy: scipy.weave.inline compilation fails with gcc 4.4
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
598520: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=598520
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python-scipy
Version: 0.7.2+dfsg1-1
Severity: normal
Tags: upstream
Bug #455661 applies to scipy too, thanks to an embedded blitz.
Test case from the Ubuntu bug (LP: #302649) attached, together with full
output.
| In file included from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
| from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
| from
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
| /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In
static member function ‘static long int blitz::_bz_abs<long int>::apply(long
int)’:
| /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45:
error: ‘labs’ is not a member of ‘std’
etc.
SR
-- System Information:
Debian Release: squeeze/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-5-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_ZA.UTF-8, LC_CTYPE=en_ZA.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages python-scipy depends on:
ii libamd2.2.0 1:3.4.0-2 approximate minimum degree orderin
ii libblas3gf [libblas.so.3gf] 1.2-7 Basic Linear Algebra Reference imp
ii libc6 2.11.2-5 Embedded GNU C Library: Shared lib
ii libgcc1 1:4.4.4-8 GCC support library
ii libgfortran3 4.4.4-8 Runtime library for GNU Fortran ap
ii liblapack3gf [liblapack.so.3 3.2.1-8 library of linear algebra routines
ii libstdc++6 4.4.4-8 The GNU Standard C++ Library v3
ii libumfpack5.4.0 1:3.4.0-2 sparse LU factorization library
ii python 2.6.5-13 interactive high-level object-orie
ii python-central 0.6.16+nmu1 register and build utility for Pyt
ii python-numpy 1:1.4.1-4 Numerical Python adds a fast array
Versions of packages python-scipy recommends:
ii g++ [c++-compiler] 4:4.4.4-2 The GNU C++ compiler
ii g++-4.4 [c++-compiler] 4.4.4-8 The GNU C++ compiler
Versions of packages python-scipy suggests:
pn python-profiler <none> (no description available)
-- no debconf information
--
Stefano Rivera
http://tumbleweed.org.za/
H: +27 21 465 6908 C: +27 72 419 8559 UCT: x3127
import scipy
import scipy.weave
import scipy.weave.converters
foo = scipy.zeros((10,10), dtype=scipy.uint8)
code = \
"""
int x, y;
for (x = 0; x < 10; x++)
{
for (y = 0; y < 10; y++)
{
foo(x, y) += 1;
}
}
"""
scipy.weave.inline(code, ['foo'], type_converters=scipy.weave.converters.blitz)
print foo
In file included from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static
member function ‘static long int blitz::_bz_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45: error:
‘labs’ is not a member of ‘std’
In file included from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static
member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503: error:
call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long
double)
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static
member function ‘static long int blitz::Fn_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524: error:
‘labs’ is not a member of ‘std’
In file included from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static
member function ‘static long int blitz::_bz_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45: error:
‘labs’ is not a member of ‘std’
In file included from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static
member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503: error:
call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long
double)
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static
member function ‘static long int blitz::Fn_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524: error:
‘labs’ is not a member of ‘std’
Traceback (most recent call last):
File "weave_test.py", line 18, in <module>
scipy.weave.inline(code, ['foo'],
type_converters=scipy.weave.converters.blitz)
File "/usr/lib/python2.6/dist-packages/scipy/weave/inline_tools.py", line
335, in inline
**kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/inline_tools.py", line
462, in compile_function
verbose=verbose, **kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/ext_tools.py", line 365,
in compile
verbose = verbose, **kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/build_tools.py", line 288,
in build_extension
raise e
scipy.weave.build_tools.CompileError: error: Command "g++ -pthread
-fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -fPIC
-I/usr/lib/python2.6/dist-packages/scipy/weave
-I/usr/lib/python2.6/dist-packages/scipy/weave/scxx
-I/usr/lib/python2.6/dist-packages/scipy/weave/blitz
-I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c
/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp -o
/tmp/stefanor/python26_intermediate/compiler_ffd6959949a2fd8833943154602a6643/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.o"
failed with exit status 1
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: python-scipy
Source-Version: 0.8.0+dfsg1-1
We believe that the bug you reported is fixed in the latest version of
python-scipy, which is due to be installed in the Debian FTP archive:
python-scipy-dbg_0.8.0+dfsg1-1_amd64.deb
to main/p/python-scipy/python-scipy-dbg_0.8.0+dfsg1-1_amd64.deb
python-scipy_0.8.0+dfsg1-1.debian.tar.gz
to main/p/python-scipy/python-scipy_0.8.0+dfsg1-1.debian.tar.gz
python-scipy_0.8.0+dfsg1-1.dsc
to main/p/python-scipy/python-scipy_0.8.0+dfsg1-1.dsc
python-scipy_0.8.0+dfsg1-1_amd64.deb
to main/p/python-scipy/python-scipy_0.8.0+dfsg1-1_amd64.deb
python-scipy_0.8.0+dfsg1.orig.tar.gz
to main/p/python-scipy/python-scipy_0.8.0+dfsg1.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Varun Hiremath <[email protected]> (supplier of updated python-scipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 24 Dec 2010 08:20:54 -0500
Source: python-scipy
Binary: python-scipy python-scipy-dbg
Architecture: source amd64
Version: 0.8.0+dfsg1-1
Distribution: experimental
Urgency: low
Maintainer: Debian Python Modules Team
<[email protected]>
Changed-By: Varun Hiremath <[email protected]>
Description:
python-scipy - scientific tools for Python
python-scipy-dbg - scientific tools for Python - debugging symbols
Closes: 598520
Changes:
python-scipy (0.8.0+dfsg1-1) experimental; urgency=low
.
[ Varun Hiremath ]
* New upstream release
* Build-Depend on python-numpy-* (>= 1:1.5.1)
* Update all the debian/patches/*
.
[ Luca Falavigna ]
* Remove myself from Uploaders.
.
[ Stefano Rivera ]
* debian/patches/blitz++.patch: Fix scipy.weave.inline compilations. Thanks
to Sameer Morar (Closes: #598520, LP: #302649)
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